genome.fa.s17.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167842.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_113, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81152

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6589--6879	143	2.0	143	84	6	385	43	9	7	39	1.65
7021--7072	17	3.0	18	73	18	56	46	13	5	34	1.67
9449--10172	181	4.1	176	77	9	630	41	7	8	42	1.64
11198--11248	18	2.9	17	74	11	50	47	9	3	39	1.55
10762--12359	362	4.4	361	77	6	1292	41	8	9	40	1.69
10757--12359	181	8.8	180	75	7	1106	41	8	9	40	1.69
12561--14266	181	9.5	178	74	7	1095	40	8	10	40	1.71
13011--14216	541	2.3	525	78	7	1210	40	8	10	40	1.71
13976--14601	336	1.9	337	79	6	716	41	10	10	37	1.74
14263--15243	180	5.5	180	71	9	510	40	8	9	41	1.68
14274--15195	360	2.6	359	76	8	797	40	8	9	41	1.67
15318--15350	18	1.9	17	88	11	50	48	3	6	42	1.43
15276--17493	181	12.3	181	76	8	1524	39	8	9	42	1.68
15999--17240	360	3.4	359	78	6	1052	39	8	9	42	1.68
17445--17722	146	1.9	146	85	2	389	38	12	11	36	1.81
17253--17877	328	1.9	322	80	5	713	41	10	10	37	1.74
17575--18624	182	5.8	181	77	8	941	40	8	10	40	1.70
18712--29738	181	60.8	181	70	12	3721	40	8	9	41	1.69
20135--20170	16	2.2	16	90	9	56	41	8	13	36	1.75
19465--22206	704	3.9	696	77	6	2168	40	8	10	41	1.69
20707--21205	177	2.9	170	76	10	396	39	8	9	42	1.68
19285--22434	523	5.9	523	76	8	2025	40	8	10	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23149--23285	67	2.0	67	84	0	175	40	9	11	38	1.74
22550--29738	360	19.9	355	72	10	3415	40	8	9	41	1.69
26925--29724	359	7.8	355	75	8	1305	40	8	9	41	1.68
26245--29574	896	3.7	883	75	7	2702	40	8	9	40	1.69
29955--30011	27	2.1	27	90	0	87	36	8	8	45	1.66
31921--32663	180	4.1	180	78	5	684	40	10	7	42	1.67
32873--34953	177	11.7	174	70	12	785	40	10	8	40	1.70
33551--33585	15	2.2	16	90	5	54	37	11	8	42	1.72
32783--34250	696	2.1	701	80	6	1588	41	10	8	40	1.68
33649--35002	180	7.5	180	73	9	839	40	10	9	39	1.71
35696--36122	181	2.4	181	81	5	488	39	10	8	40	1.71
35979--36256	146	1.9	147	85	2	391	36	11	12	38	1.81
36208--38424	181	12.3	179	75	7	1587	41	9	8	39	1.68
36287--38420	901	2.4	901	84	4	2726	42	9	8	39	1.68
38350--38382	18	1.9	17	88	11	50	42	6	3	48	1.43
38384--38520	67	2.1	66	91	1	220	35	13	7	44	1.71
38583--40473	358	5.3	358	75	8	889	40	10	8	39	1.71
38451--39442	180	5.5	178	72	9	680	41	10	8	40	1.69
39276--39599	156	2.1	157	84	2	411	37	9	8	45	1.67
38946--39912	517	1.9	514	81	4	1167	38	10	9	41	1.73
39461--41143	181	9.4	179	76	7	1291	40	10	9	39	1.72
39432--41143	358	4.8	359	76	7	1315	40	10	9	39	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41655--42939	181	7.1	181	79	4	1135	40	9	8	41	1.69
42445--42494	17	2.8	19	67	14	52	40	6	10	44	1.63
41655--42934	541	2.4	539	81	4	1373	40	9	8	41	1.69
43528--44355	182	4.6	180	76	9	684	42	8	7	41	1.64
46076--46705	318	2.0	317	80	7	706	41	9	8	40	1.68
46390--47155	180	4.3	176	75	9	531	39	9	9	41	1.69
47096--47147	17	3.0	18	73	18	56	34	5	13	46	1.67
47288--47578	143	2.0	143	85	5	392	39	7	9	43	1.66
54945--54986	21	2.0	21	86	9	59	35	9	40	14	1.78
63463--63507	23	2.0	23	82	4	56	26	17	2	53	1.56
71587--71677	45	2.0	45	81	12	107	30	20	23	25	1.98

Tables:   1

The End!