genome.fa.s172.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167997.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_253, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42229

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--576	181	3.2	180	79	5	583	41	9	9	40	1.70
6290--6315	12	2.2	12	100	0	52	30	15	0	53	1.42
6556--6613	29	2.0	29	96	0	107	46	13	1	37	1.54
8045--10036	180	11.1	179	76	7	1420	41	9	8	40	1.69
8014--10036	361	5.7	354	75	7	1184	41	9	8	40	1.68
8706--9710	177	5.6	175	74	8	438	41	11	7	40	1.70
9923--10135	109	2.0	109	84	5	279	40	8	4	46	1.56
10181--12737	181	14.2	179	75	8	1706	42	9	8	40	1.68
10032--12737	530	5.0	532	75	10	1850	42	9	7	39	1.68
10100--12675	354	7.2	354	74	9	1435	42	9	7	39	1.67
12613--12852	115	2.1	115	96	0	444	47	5	10	37	1.60
12734--21010	181	46.2	180	75	7	5621	41	9	8	40	1.67
18215--18248	17	2.1	17	88	5	52	38	8	0	52	1.33
18193--18580	172	2.3	165	81	8	426	38	10	10	40	1.73
19673--19709	18	2.0	19	89	5	58	29	13	8	48	1.71
22119--22215	48	2.0	48	95	0	176	19	5	22	52	1.65
26136--31145	180	27.6	180	75	8	3275	40	8	9	41	1.67
26136--34002	181	43.3	180	73	9	4005	40	8	9	42	1.67
26136--34002	361	21.7	360	72	11	3821	40	8	9	42	1.67
27974--28285	169	1.8	169	84	1	428	40	7	9	42	1.66
31030--31295	148	1.8	147	82	8	344	40	7	8	43	1.64
31178--31650	248	1.9	248	88	1	716	39	8	6	44	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31904--31936	18	1.9	17	88	11	50	48	6	6	39	1.53
31426--34002	358	7.2	357	75	8	1742	39	8	9	42	1.67
31409--34002	539	4.8	536	74	8	1883	39	8	9	42	1.68
34257--35911	177	9.4	177	71	12	850	38	7	10	43	1.68
34635--35911	527	2.4	530	78	9	1254	38	8	10	43	1.69
34286--35837	176	8.8	175	72	12	665	38	8	10	42	1.69
35583--35911	176	1.9	171	82	7	410	40	8	10	41	1.68
35909--35941	8	4.1	8	85	14	50	60	0	0	39	0.97
36055--36390	180	1.9	181	83	4	446	40	7	9	43	1.64
36972--37604	182	3.5	175	76	7	551	41	6	11	39	1.68
37708--37843	65	2.1	66	88	2	202	42	5	13	37	1.69
37803--39667	181	10.4	180	75	8	1400	40	8	9	42	1.67
40472--41625	181	6.4	182	76	7	1025	41	9	7	40	1.67
41002--41034	18	1.9	17	88	11	50	42	6	3	48	1.43
41489--41757	135	2.0	135	85	1	360	40	7	9	42	1.66
41305--41935	316	2.0	318	83	3	806	42	8	9	39	1.67
41670--42183	180	2.8	180	78	8	449	40	8	10	40	1.70

Tables:   1

The End!