genome.fa.s18.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167843.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_114, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81131

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2319--12286	886	11.3	889	83	5	11484	25	24	24	26	2.00
4057--4125	26	2.7	26	95	0	120	27	24	18	28	1.98
5823--5904	26	3.2	26	96	0	146	29	24	18	28	1.98
6740--6792	26	2.0	26	92	0	88	30	26	18	24	1.98
8465--8517	26	2.0	26	96	0	97	28	26	18	26	1.98
9351--9403	26	2.0	26	92	0	88	30	26	16	26	1.97
7629--12286	889	5.3	888	84	5	5691	25	24	24	26	2.00
11096--11148	26	2.0	26	100	0	106	26	26	20	26	1.99
14822--14872	26	2.0	26	96	0	93	27	27	17	27	1.98
14848--26120	874	12.9	871	83	5	13213	25	24	23	26	2.00
16597--26120	891	10.8	890	83	6	11133	25	24	23	26	2.00
19196--19247	26	2.0	26	96	0	95	26	25	19	28	1.98
22710--22762	26	2.0	26	96	0	97	26	24	20	28	1.99
23596--23648	26	2.0	26	96	0	97	26	24	20	28	1.99
26139--28084	875	2.2	871	86	3	2703	24	24	25	26	2.00
28690--29002	59	5.3	58	84	7	398	32	12	8	47	1.70
28690--29002	119	2.6	119	90	5	483	32	12	8	47	1.70
29007--29099	5	18.6	5	71	20	70	77	2	4	16	1.02
29007--29083	26	3.1	24	77	17	68	77	2	5	14	1.04
29006--29075	30	2.4	31	83	7	83	77	2	7	12	1.09
29012--29075	31	2.1	30	82	5	76	78	3	6	12	1.06
29130--29165	4	9.5	4	88	11	58	77	0	0	22	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29130--29165	11	3.2	12	92	7	58	77	0	0	22	0.76
29130--29170	15	2.8	15	88	3	66	80	0	0	19	0.71
29999--30124	20	6.0	21	68	18	75	73	4	4	17	1.19
29997--30124	43	3.0	41	81	12	118	73	4	4	17	1.18
30251--30289	16	2.4	16	87	8	53	79	5	0	15	0.90
30445--30482	19	2.1	18	90	5	58	0	0	15	84	0.63
30490--30622	42	3.1	42	91	3	205	33	24	17	24	1.96
31643--31721	8	9.0	8	79	16	70	11	13	0	74	1.07
31642--31719	9	8.7	9	84	15	92	10	12	0	76	1.01
31650--31721	29	2.6	27	89	6	108	12	13	0	73	1.10
31642--31719	20	4.3	18	83	16	92	10	12	0	76	1.01
42628--42688	33	1.9	30	83	12	77	72	3	6	18	1.21
42670--42754	43	2.0	44	81	11	104	70	5	3	20	1.23
42731--42808	26	3.1	25	75	12	70	67	2	0	29	1.03
42883--42919	6	6.2	6	90	9	58	83	2	0	13	0.74
43272--43318	21	2.2	21	100	0	94	34	21	23	21	1.97
44536--44588	26	2.0	26	81	0	61	32	22	18	26	1.97
43001--48116	869	5.8	871	84	5	6281	26	24	23	25	2.00
48883--48961	26	3.0	26	98	0	149	29	26	17	26	1.98
50114--50166	26	2.0	26	92	0	88	30	24	18	26	1.98
51001--51053	26	2.0	26	96	0	97	24	26	22	26	2.00
51910--51962	26	2.0	26	100	0	106	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49242--55038	897	6.5	894	82	7	6620	25	24	23	25	2.00
52806--52858	26	2.0	26	100	0	106	26	26	20	26	1.99
55905--57251	685	2.0	676	87	2	1921	26	23	23	25	2.00
58879--58931	26	2.0	26	85	7	72	24	20	20	33	1.97
60585--60637	26	2.0	26	92	0	88	26	26	18	28	1.98
59416--64977	900	6.3	891	84	5	6693	26	24	23	25	2.00
61485--61537	26	2.0	26	92	0	88	26	20	22	30	1.98
63250--63302	26	2.0	26	92	0	88	30	26	15	28	1.96
65952--66409	179	2.6	172	86	10	602	33	12	9	44	1.74
65952--66411	60	7.7	60	85	6	573	33	12	9	45	1.74
66426--66521	5	19.6	5	79	12	94	79	2	3	15	0.96
66426--66515	18	4.7	18	76	18	83	78	2	3	15	0.97
66426--66521	23	4.1	23	76	18	92	79	2	3	15	0.96
66426--66521	12	8.7	11	76	14	83	79	2	3	15	0.96
66426--66521	33	2.9	33	79	16	110	79	2	3	15	0.96
66425--66520	28	3.4	30	79	13	91	78	2	4	15	1.00
66426--66528	37	2.8	38	85	10	124	77	1	4	15	1.02
66426--66521	42	2.3	41	85	5	122	79	2	3	15	0.96
66426--66521	47	2.1	45	84	13	124	79	2	3	15	0.96
67420--67476	31	1.9	30	86	10	82	73	5	8	12	1.23
67524--67564	18	2.2	19	86	4	57	68	0	0	31	0.90
67898--68022	41	3.0	42	89	4	182	37	23	17	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67958--68090	68	2.0	68	93	3	232	35	22	17	24	1.95
68026--68302	41	6.8	41	88	5	400	35	23	16	24	1.95
74223--74260	15	2.4	16	86	4	51	5	36	5	52	1.47
79758--80271	174	3.0	172	89	8	744	35	10	7	46	1.67
79758--80243	117	4.2	110	87	9	656	34	11	7	45	1.69
79758--80243	229	2.1	230	89	7	756	34	11	7	45	1.69
79758--80257	228	2.2	229	89	7	766	35	11	7	46	1.68
80269--80349	29	2.8	28	80	14	99	81	1	3	13	0.89
80273--80353	22	3.7	21	78	17	85	81	1	2	14	0.86
80278--80344	10	6.5	10	80	13	73	82	1	2	13	0.86
80273--80349	25	3.1	24	80	12	84	81	1	2	14	0.86
80269--80353	30	2.8	31	78	16	90	81	1	3	14	0.89
80268--80413	18	8.5	17	69	18	81	75	3	4	16	1.11

Tables:   1

The End!