genome.fa.s181.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168006.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_261, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41447

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5--1284	181	7.1	180	77	6	1030	38	8	10	42	1.70
10--1206	362	3.3	354	78	8	1175	38	8	9	42	1.68
1290--1677	180	2.1	180	82	2	465	40	9	10	39	1.71
1849--3767	181	10.7	181	78	5	1644	40	9	9	40	1.69
4440--4474	18	1.9	18	88	0	52	25	8	17	48	1.75
4302--5062	200	3.8	197	77	8	650	35	12	11	40	1.79
5247--14205	361	25.3	355	72	11	4205	40	8	9	41	1.68
5256--10584	181	29.8	180	75	7	3672	39	8	10	42	1.69
5256--11440	541	11.6	536	73	10	2704	39	8	10	42	1.69
10441--10843	164	2.4	164	82	5	481	38	8	8	43	1.68
11472--11881	180	2.3	178	80	7	422	42	7	7	42	1.61
11764--12036	152	1.8	152	83	7	367	40	7	5	46	1.56
11898--14205	181	12.9	179	76	7	1816	40	8	9	41	1.67
15841--17027	181	6.6	181	76	5	970	41	8	8	40	1.67
17067--17100	17	1.9	18	88	5	52	52	2	5	38	1.41
17912--21712	181	21.2	180	76	6	2807	40	8	10	40	1.69
20018--20058	18	2.3	18	84	16	59	43	2	9	43	1.50
17875--21712	542	7.1	534	75	8	2454	40	8	10	40	1.69
21967--22594	177	3.5	182	76	5	510	36	10	10	42	1.73
22486--22727	120	2.0	119	86	2	333	33	13	8	44	1.74
22605--26408	181	21.2	181	77	7	3008	41	9	8	40	1.68
22612--26377	542	7.0	531	75	8	2559	41	9	8	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26413--27808	182	7.8	177	73	10	694	41	10	8	39	1.69
28617--28951	175	1.9	175	80	6	392	43	12	7	36	1.71
28690--29005	175	1.8	174	80	6	388	40	12	8	37	1.75
28876--29212	183	1.8	182	80	8	398	43	10	7	37	1.67
28241--30483	181	12.5	179	71	10	895	41	9	8	39	1.69
29537--30483	358	2.6	360	78	6	938	41	9	8	40	1.67
27908--35348	361	20.7	357	68	14	1306	41	9	8	40	1.68
30440--30688	133	1.9	133	86	3	358	44	9	6	39	1.62
30831--33011	181	12.2	177	74	8	1182	41	10	8	39	1.69
31187--33011	180	10.2	180	74	9	763	42	10	8	39	1.69
32527--33510	510	1.9	505	79	9	1072	40	10	7	41	1.67
33031--35363	180	13.0	178	73	12	1214	41	9	8	41	1.66
33048--37802	542	8.9	528	72	13	1660	41	9	8	41	1.67
33859--35363	181	8.4	179	74	9	519	41	9	8	40	1.66
35115--35153	18	2.2	18	86	9	53	58	2	5	33	1.33
35358--37940	182	14.4	180	75	10	1733	40	9	8	41	1.68
35953--37801	539	3.4	539	76	9	1403	40	9	8	41	1.67
35358--37938	361	7.2	358	74	10	1819	40	9	8	41	1.68
38407--40437	181	11.4	178	72	11	916	42	9	8	39	1.68
39046--39081	16	2.1	17	90	10	56	38	11	5	44	1.63
39663--40293	174	3.5	176	75	10	476	43	9	7	39	1.66
39412--40437	176	5.8	181	73	12	578	41	9	7	41	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40244--40638	205	1.9	205	81	4	483	42	8	7	41	1.63
40107--40821	382	1.9	382	80	8	837	42	8	7	41	1.65
40448--41354	181	5.1	179	76	10	657	42	8	9	39	1.67

Tables:   1

The End!