genome.fa.s19.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167844.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_115, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80870

Tables:   1   2   

This is table  1  of  2  ( 124 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--78	29	2.6	30	74	7	70	48	1	2	47	1.23
93--172	26	3.3	25	78	11	78	45	2	2	50	1.28
442--2006	361	4.4	356	77	8	1191	41	8	7	42	1.65
283--2006	181	9.6	180	75	7	1194	41	8	7	41	1.65
3629--3678	12	3.8	13	82	10	50	20	4	2	74	1.08
4107--4563	230	2.0	230	96	0	842	28	16	18	36	1.93
16302--17361	485	2.2	487	83	4	1330	40	17	10	31	1.84
17391--21740	489	9.0	488	86	2	5770	39	19	11	29	1.87
22211--23501	647	2.0	646	90	1	2003	37	17	12	31	1.87
22893--23845	488	2.0	488	88	1	1419	38	18	13	30	1.89
23916--28440	487	9.2	488	81	6	4718	39	18	12	29	1.88
23916--30909	975	7.2	969	82	6	7878	40	18	12	28	1.87
28442--30909	487	5.1	485	88	1	3671	40	18	12	28	1.87
31634--33621	489	4.1	487	81	6	2121	39	18	12	29	1.88
34188--38459	486	8.9	486	82	4	4717	38	18	13	29	1.89
38409--38526	33	3.6	33	89	2	175	33	9	15	41	1.79
40144--41471	438	2.9	444	82	8	1488	39	18	13	28	1.88
40581--41797	476	2.6	474	86	3	1623	39	18	12	29	1.88
42174--42703	183	2.9	176	78	9	536	39	6	9	44	1.63
42769--42842	27	2.8	26	80	15	73	58	1	2	37	1.21
42796--42895	14	7.1	14	70	18	57	57	0	2	41	1.10
43065--43159	18	5.2	18	70	21	63	45	1	2	51	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43061--43172	40	2.8	42	75	16	121	45	0	1	51	1.17
43111--43152	15	2.9	14	86	13	50	45	2	2	50	1.27
43762--43830	28	2.6	25	72	14	59	50	5	0	43	1.26
44049--44105	17	3.5	17	79	16	75	47	1	0	50	1.11
44654--44687	17	2.0	17	88	11	52	44	0	0	55	0.99
45133--45174	12	3.6	12	90	6	68	38	0	0	61	0.96
45128--45180	23	2.4	21	76	14	61	43	0	1	54	1.11
45730--45762	16	2.0	17	88	5	50	51	0	3	45	1.16
45740--45807	20	3.4	20	74	24	63	51	0	1	47	1.09
46269--46344	40	1.9	40	82	15	95	55	0	1	43	1.08
47142--47200	24	2.4	25	78	13	61	45	3	1	49	1.28
47218--47252	16	2.2	16	90	5	54	37	2	0	60	1.12
47298--47352	24	2.4	22	81	9	56	52	3	1	41	1.29
48017--48483	182	2.6	180	78	9	481	38	6	9	44	1.63
48617--48716	14	7.1	14	70	18	57	57	0	2	41	1.10
48885--48915	16	2.0	15	93	6	53	51	0	0	48	1.00
49173--49253	35	2.3	36	77	10	87	41	4	2	50	1.37
49395--49427	18	1.9	17	88	11	50	39	6	6	48	1.53
50004--50034	15	2.1	14	94	5	53	61	0	3	35	1.12
50208--50269	28	2.2	29	80	13	76	50	3	1	45	1.27
50240--50312	29	2.7	27	76	21	80	53	4	0	42	1.20
50416--50450	18	1.9	18	94	0	61	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50418--50483	25	2.6	25	78	7	71	53	3	0	43	1.16
50431--50477	13	3.6	14	78	18	57	51	4	0	44	1.21
50568--50603	18	1.9	19	88	5	56	55	2	2	38	1.29
50500--50650	18	8.1	18	65	22	53	49	2	3	45	1.32
51301--51325	11	2.3	11	100	0	50	40	0	8	52	1.31
52062--52129	23	2.9	23	72	10	66	60	2	2	33	1.27
52229--52283	22	2.5	22	75	13	60	41	7	0	50	1.30
53393--54162	180	4.3	178	75	9	654	40	8	9	41	1.69
53393--54067	361	1.9	357	79	7	760	40	8	9	42	1.67
54449--54504	29	1.9	29	81	0	67	46	3	1	48	1.30
54815--54852	18	2.1	18	90	0	58	60	0	2	36	1.11
54972--55020	14	3.4	15	78	16	50	36	2	6	55	1.37
54986--55034	23	2.0	23	84	15	62	40	4	4	51	1.40
55428--55510	24	3.9	21	73	25	66	49	0	2	48	1.14
55421--55488	27	2.5	28	78	4	68	51	0	1	47	1.09
55419--55483	29	2.2	29	78	10	71	52	0	1	46	1.10
55475--55519	25	1.9	22	82	13	54	46	2	2	48	1.26
55957--56023	10	6.7	11	73	23	51	47	0	0	52	1.00
55957--56015	20	2.9	19	85	14	66	47	0	0	52	1.00
55963--56021	16	3.9	16	72	24	56	49	0	0	50	1.00
55969--56040	4	18.0	4	74	23	55	50	1	0	48	1.09
55968--56040	22	3.5	20	80	17	69	49	1	0	49	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58923--58983	32	2.0	32	84	12	85	50	1	0	47	1.10
58933--58959	13	2.1	13	100	0	54	51	0	0	48	1.00
58923--59000	31	2.6	28	74	20	68	50	1	0	48	1.09
59444--59495	27	1.9	27	84	7	70	46	0	0	53	1.00
59436--59498	23	2.5	25	77	10	67	46	0	0	53	1.00
59614--59696	16	4.9	18	72	20	65	51	1	0	46	1.08
59630--59696	23	2.8	24	81	9	82	52	0	0	47	1.00
59654--59724	24	2.6	28	70	21	69	46	0	2	50	1.16
59630--59711	24	3.4	24	81	6	94	48	0	1	50	1.08
61112--61237	20	5.8	21	73	15	89	43	0	2	53	1.19
61138--61243	51	2.1	53	82	12	132	43	0	2	52	1.22
62128--62177	21	2.4	21	78	21	61	44	4	0	52	1.20
62250--62296	21	2.2	22	77	7	53	53	2	0	44	1.12
62948--62987	21	1.9	21	85	10	55	42	2	5	50	1.37
66325--66400	40	1.9	40	86	7	111	42	7	5	44	1.56
66661--66713	17	3.1	17	84	12	65	56	0	0	43	0.99
66637--66750	19	5.7	21	73	20	84	54	0	0	45	0.99
66717--66754	13	2.8	13	88	4	58	52	0	0	47	1.00
66776--66830	28	2.0	27	82	7	65	50	0	3	45	1.19
66924--66957	3	11.0	3	87	6	50	35	2	0	61	1.11
66915--66952	15	2.5	15	95	4	67	36	5	0	57	1.21
66971--67004	13	2.6	14	90	9	54	41	0	2	55	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67924--67980	29	2.0	27	83	12	71	40	7	1	50	1.40
68047--68567	181	2.9	178	76	7	498	40	8	9	42	1.68
68758--69264	180	2.8	178	80	5	511	41	8	8	41	1.67
69915--70006	32	3.2	29	76	20	70	56	1	1	41	1.13
69919--69959	12	3.6	12	83	6	50	60	0	0	39	0.96
69935--70001	14	4.0	18	70	20	56	58	1	1	38	1.17
69918--70008	25	3.4	25	72	24	60	57	1	1	40	1.13
69945--70012	32	2.1	32	86	10	93	52	1	2	42	1.25
70633--70719	35	2.6	35	84	10	103	45	0	2	51	1.13
71377--71467	39	2.3	39	78	16	98	51	1	1	46	1.15
71407--71464	12	4.6	12	74	19	55	53	1	1	43	1.21
71407--71463	27	2.1	27	83	6	71	52	1	1	43	1.21
72213--72246	17	1.9	18	88	5	52	41	0	0	58	0.98
72909--72949	9	4.2	10	82	11	50	53	0	0	46	1.00
72852--72988	74	1.9	72	79	11	154	47	0	1	50	1.15
73250--73307	9	6.4	9	73	15	57	44	1	0	53	1.10
74165--74228	30	2.1	31	82	2	76	45	3	0	51	1.17
74653--74691	16	2.5	16	83	4	53	38	0	0	61	0.96
74636--74779	67	2.1	67	81	9	161	44	1	2	51	1.24
74781--74826	13	3.7	13	77	19	53	47	2	2	47	1.26
74810--74862	23	2.3	23	78	9	56	50	1	1	45	1.23
77188--77258	25	3.0	23	78	13	72	46	4	1	47	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77163--77258	23	4.0	23	72	18	72	46	4	1	47	1.28
77292--77355	13	5.1	13	78	14	55	48	0	1	50	1.10
77631--77666	18	1.9	19	94	5	65	38	0	0	61	0.96
77764--77812	23	2.1	24	85	11	66	48	2	0	48	1.12
78253--78305	13	3.6	14	76	16	54	47	1	0	50	1.12
78312--78336	3	8.3	3	100	0	50	64	0	0	36	0.94
78477--78518	11	3.6	12	78	15	52	47	2	0	50	1.14
79000--79045	23	2.1	21	84	8	56	54	2	2	41	1.25
79564--79601	14	2.7	14	84	8	51	15	2	5	76	1.08
79656--79751	40	2.4	38	77	16	90	17	5	7	69	1.30

Tables:   1   2