genome.fa.s209.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168034.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_287, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38833

Tables:   1   

This is table  1  of  1  ( 106 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
170--259	22	4.0	23	71	23	61	44	1	3	51	1.25
325--356	17	1.9	17	93	6	57	50	0	0	50	1.00
435--472	19	2.0	19	85	10	51	50	2	2	44	1.30
614--673	26	2.2	29	83	16	76	48	6	0	45	1.29
1227--1280	28	1.9	28	81	7	65	38	3	5	51	1.43
2357--2400	14	3.5	14	74	25	53	45	0	0	54	0.99
2340--2440	27	3.7	27	70	20	68	45	1	0	51	1.19
3628--3703	29	3.0	24	72	20	66	52	1	2	43	1.23
3769--3816	19	2.6	18	86	6	60	54	2	0	43	1.12
3854--3907	24	2.2	24	78	12	58	55	0	1	42	1.10
3895--3955	25	2.5	24	76	7	59	52	1	3	42	1.27
4966--5015	25	2.0	26	88	11	77	50	4	4	42	1.40
5144--5186	16	2.6	17	89	7	63	48	4	0	46	1.22
5607--5657	13	3.8	13	77	12	50	39	1	0	58	1.09
5615--5656	20	2.2	18	87	8	57	38	2	0	59	1.10
6748--6775	3	9.3	3	100	0	56	67	0	0	32	0.91
6783--6838	24	2.3	25	84	9	71	48	3	0	48	1.19
7003--7092	22	4.0	23	71	23	61	44	1	3	51	1.25
7158--7189	17	1.9	17	93	6	57	50	0	0	50	1.00
7269--7306	19	2.0	19	85	10	51	50	2	2	44	1.30
7703--7735	17	1.9	17	93	0	57	36	0	0	63	0.95
9204--9247	14	3.5	14	74	25	53	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9187--9287	27	3.7	27	70	20	68	45	1	0	51	1.19
10475--10550	29	3.0	24	72	20	66	52	1	2	43	1.23
10616--10663	19	2.6	18	86	6	60	54	2	0	43	1.12
10717--10755	19	2.1	19	85	9	53	53	0	0	46	1.00
10744--10804	25	2.5	24	76	7	59	52	1	3	42	1.27
11815--11864	25	2.0	26	88	11	77	50	4	4	42	1.40
11993--12035	16	2.6	17	89	7	63	48	4	0	46	1.22
12454--12504	13	3.8	13	77	12	50	39	1	0	58	1.09
12462--12503	20	2.2	18	87	8	57	38	2	0	59	1.10
13595--13622	3	9.3	3	100	0	56	67	0	0	32	0.91
13630--13685	24	2.3	25	84	9	71	48	3	0	48	1.19
13850--13939	22	4.0	23	71	23	61	44	1	3	51	1.25
14005--14036	17	1.9	17	93	6	57	50	0	0	50	1.00
14116--14153	19	2.0	19	85	10	51	50	2	2	44	1.30
14562--14594	17	1.9	17	93	0	57	36	0	0	63	0.95
16066--16109	14	3.5	14	74	25	53	45	0	0	54	0.99
16049--16149	27	3.7	27	70	20	68	45	1	0	51	1.19
17344--17419	29	3.0	24	72	20	66	52	1	2	43	1.23
17485--17532	19	2.6	18	86	6	60	54	2	0	43	1.12
17587--17624	19	2.0	19	85	10	51	52	0	0	47	1.00
17613--17673	25	2.5	24	76	7	59	52	1	3	42	1.27
18684--18733	25	2.0	26	88	11	77	50	4	4	42	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18862--18904	16	2.6	17	89	7	63	48	4	0	46	1.22
19323--19373	13	3.8	13	77	12	50	39	1	0	58	1.09
19331--19372	20	2.2	18	87	8	57	38	2	0	59	1.10
20502--20526	3	8.3	3	100	0	50	68	0	0	32	0.90
20534--20589	24	2.3	25	84	9	71	48	3	0	48	1.19
20754--20843	22	4.0	23	71	23	61	44	1	3	51	1.25
20909--20940	17	1.9	17	93	6	57	50	0	0	50	1.00
21020--21057	19	2.0	19	85	10	51	50	2	2	44	1.30
21467--21499	17	1.9	17	93	0	57	36	0	0	63	0.95
22971--23014	14	3.5	14	74	25	53	45	0	0	54	0.99
22954--23054	27	3.7	27	70	20	68	45	1	0	51	1.19
24250--24325	29	3.0	24	72	20	66	52	1	2	43	1.23
24391--24438	19	2.6	18	86	6	60	54	2	0	43	1.12
24492--24530	19	2.1	19	85	9	53	53	0	0	46	1.00
24519--24579	25	2.5	24	76	7	59	52	1	3	42	1.27
25459--25520	30	2.1	30	82	11	74	67	4	9	17	1.36
25540--25576	18	2.0	19	89	5	58	75	0	10	13	1.04
26049--26084	18	2.0	18	88	0	54	72	2	11	13	1.23
25267--26196	508	1.8	502	89	4	1091	65	6	11	17	1.44
26519--26587	12	5.8	12	76	19	56	78	1	10	10	1.04
28003--28044	20	2.1	20	82	8	50	66	2	14	16	1.35
28030--28064	16	2.2	16	90	10	54	77	5	8	8	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28177--28214	20	1.9	20	84	10	51	34	0	7	57	1.28
29130--29164	11	3.1	11	91	4	52	74	0	2	22	0.95
29331--29416	43	2.0	43	84	11	113	72	3	8	16	1.23
29887--29944	17	3.2	18	76	20	59	77	1	10	10	1.06
29888--29955	35	1.9	36	85	8	95	75	1	10	13	1.12
30016--30050	16	2.1	17	89	5	54	71	0	8	20	1.11
31106--31143	18	2.1	18	85	9	51	84	2	7	5	0.86
31618--31689	18	3.9	18	70	13	58	72	2	9	15	1.22
31624--31689	19	3.6	18	76	13	64	71	3	9	16	1.25
32091--32167	8	9.4	8	70	16	59	79	2	5	12	1.01
32089--32150	28	2.2	28	82	0	70	79	3	3	14	0.99
32106--32186	43	1.9	42	82	7	101	75	2	7	14	1.13
32549--32591	12	3.5	13	87	9	63	76	6	6	9	1.15
32549--32597	25	2.0	23	84	11	62	77	6	8	8	1.12
32584--32613	16	1.9	15	93	6	51	80	0	6	13	0.91
32638--32707	17	3.9	18	72	10	56	71	1	5	21	1.15
32637--32699	30	2.2	29	83	13	78	71	0	4	23	1.05
32638--32697	18	3.5	16	76	14	57	71	0	5	23	1.05
33111--33180	19	3.4	19	72	16	59	74	1	15	8	1.13
33839--33891	19	2.8	20	72	11	58	62	1	1	33	1.17
34081--34127	22	2.1	22	84	7	60	72	2	8	17	1.19
34260--34299	17	2.3	19	83	16	59	70	7	5	17	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34645--34695	18	2.9	17	77	11	59	74	3	7	13	1.18
34542--34772	107	2.2	107	92	5	384	67	4	8	19	1.34
34729--34786	22	2.8	20	80	17	64	75	5	6	12	1.16
35034--35095	27	2.2	29	78	18	69	72	8	9	9	1.28
36353--36391	19	2.1	19	85	9	53	84	2	7	5	0.84
36351--36489	35	3.8	36	71	14	106	76	3	10	10	1.14
36365--36431	17	3.9	17	74	12	57	76	1	13	8	1.09
36435--36512	25	3.1	24	76	7	66	75	2	10	11	1.14
36858--36918	18	3.5	16	76	14	59	72	1	8	18	1.18
37762--37794	14	2.3	15	94	5	59	81	6	6	6	0.97
37752--37796	14	3.5	12	82	14	54	77	6	6	8	1.11
37752--37816	28	2.5	26	82	9	78	76	6	7	9	1.14
38204--38352	66	2.2	68	77	12	157	71	2	11	14	1.22
38492--38538	19	2.4	20	83	16	55	63	6	2	27	1.30
38536--38602	20	3.6	19	76	15	68	83	4	5	5	0.90
38532--38595	16	4.2	15	79	14	69	84	4	6	4	0.87
38530--38602	36	2.0	36	84	5	94	83	4	5	6	0.90
38544--38602	29	1.9	31	86	13	86	83	5	5	6	0.92

Tables:   1

The End!