genome.fa.s218.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168043.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_295, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37850

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101--1243	180	6.4	181	80	7	906	39	10	8	41	1.70
1116--1376	143	1.8	143	85	1	371	37	10	8	43	1.68
1652--1692	18	2.4	17	88	8	57	41	4	7	46	1.53
1268--4146	181	16.0	177	71	11	958	41	9	8	41	1.67
2215--2270	27	2.1	26	96	3	103	42	7	5	44	1.54
2389--2426	18	2.2	18	86	13	53	44	5	2	47	1.39
2377--4173	181	10.0	181	74	8	1189	41	9	8	40	1.67
1396--4090	362	7.4	362	72	13	1319	41	9	7	41	1.66
4240--4819	176	3.2	176	76	8	528	42	6	8	42	1.62
4199--4819	181	3.5	177	75	10	557	42	6	8	42	1.62
4992--5345	180	2.0	181	84	3	473	38	9	9	43	1.69
4861--5602	179	4.1	176	75	8	604	38	8	9	43	1.68
5695--6217	180	2.9	179	78	5	527	40	10	9	39	1.72
6309--6347	20	2.0	19	85	5	51	43	12	5	38	1.65
6338--9525	181	17.5	179	70	11	1427	41	10	8	40	1.69
8377--9406	539	1.9	533	81	6	1217	40	10	8	39	1.71
8329--9525	358	3.4	351	76	7	1028	40	10	8	40	1.70
9540--11929	181	13.3	180	76	7	1770	41	9	8	40	1.68
10796--10849	17	3.1	18	82	12	60	33	12	7	46	1.70
9540--12792	358	9.1	353	74	11	2133	41	10	8	39	1.69
11934--12792	181	4.8	177	79	5	767	42	11	7	37	1.70
14667--17107	181	13.7	179	74	9	1393	39	8	9	42	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15394--15426	18	1.9	17	88	11	50	48	6	6	39	1.53
15263--16840	179	8.8	180	72	11	500	39	8	10	41	1.69
15224--17108	899	2.1	875	79	8	1958	39	8	9	42	1.68
17066--17168	29	3.6	29	67	17	88	33	2	7	56	1.43
17049--17164	56	2.1	56	100	0	232	29	5	6	58	1.46
17099--18352	182	7.0	181	76	8	1034	39	7	10	41	1.69
18657--19320	177	3.7	176	75	7	502	39	8	9	42	1.67
18501--19360	180	4.8	178	74	7	542	40	8	9	42	1.67
19312--19413	50	2.0	51	98	1	197	48	7	7	36	1.61
19364--20271	181	5.1	178	77	7	741	41	8	9	40	1.68
19364--20253	360	2.5	357	77	5	922	41	8	9	40	1.68
20140--20446	154	2.0	153	97	0	578	39	6	12	42	1.69
20297--21774	181	8.2	178	76	6	1075	39	8	10	41	1.69
19957--20585	335	1.9	333	81	5	761	41	8	10	39	1.69
21883--24720	181	15.7	179	73	10	1313	39	8	10	42	1.70
21877--24720	363	7.9	357	73	10	1825	39	8	10	42	1.70
25270--27187	180	10.7	180	77	7	1509	40	9	8	40	1.70
25271--27170	181	10.6	179	76	8	1240	40	9	9	40	1.69
25270--27170	357	5.3	355	77	8	1413	40	9	9	40	1.69
27486--27515	15	2.0	15	93	0	51	43	40	0	16	1.48
27749--28364	200	3.1	199	78	4	589	35	12	11	40	1.79
29008--29341	177	1.9	180	82	5	426	39	5	9	45	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28899--32327	488	7.0	487	94	2	5912	40	7	9	43	1.65
30966--31299	177	1.9	179	80	6	390	39	5	10	44	1.63
28901--32327	978	3.5	975	93	2	5928	40	7	9	43	1.65
32467--33082	182	3.4	179	75	10	405	40	7	11	40	1.69
33290--34635	178	7.6	175	71	11	399	38	8	11	41	1.72
33685--34011	176	1.9	171	81	8	401	36	8	12	42	1.74
33580--37781	540	7.9	537	74	11	1579	40	8	9	41	1.69
31906--36933	181	28.1	180	74	8	3181	39	8	10	41	1.69
34879--36048	359	3.3	359	76	7	871	42	8	8	40	1.66
35397--36283	358	2.5	360	78	5	846	42	8	8	41	1.65
31919--37790	539	11.0	534	73	11	2537	40	8	10	41	1.69
36346--36933	182	3.2	180	80	5	659	39	8	11	41	1.71
36781--37265	166	2.9	166	78	6	475	40	8	9	41	1.69
37104--37790	181	3.8	180	76	4	530	41	8	8	40	1.67

Tables:   1

The End!