genome.fa.s225.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168050.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_300, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37071

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
498--549	25	2.0	26	92	3	88	26	21	21	30	1.98
2121--2173	26	2.0	26	88	0	79	28	24	16	30	1.97
2110--3632	740	2.1	742	89	2	2351	26	24	22	26	2.00
3743--3798	26	2.2	26	90	0	85	35	23	12	28	1.91
4647--4697	26	2.0	26	96	0	93	29	25	17	27	1.98
2840--14913	898	13.5	897	85	4	15079	26	24	23	25	2.00
6434--6486	26	2.0	26	96	0	97	28	26	18	26	1.98
7339--7388	26	1.9	26	91	0	82	28	24	18	30	1.97
8226--8278	26	2.0	26	92	0	88	28	24	18	28	1.98
9111--9163	26	2.0	26	88	0	79	30	22	20	26	1.98
11747--11799	26	2.0	26	92	0	88	28	20	20	30	1.98
12640--12691	26	2.0	26	96	0	95	28	26	17	26	1.97
10006--14913	896	5.5	892	84	4	6106	26	24	23	25	2.00
13548--13626	26	3.0	26	89	7	124	30	25	17	26	1.97
14468--14520	26	2.0	26	96	0	97	28	22	18	30	1.98
15013--15065	26	2.0	26	96	0	97	28	26	18	26	1.98
14377--15449	539	2.0	540	87	3	1568	22	24	26	26	2.00
15753--15803	26	2.0	26	92	0	84	27	25	17	29	1.98
15039--18270	887	3.7	875	85	4	4250	26	24	24	25	2.00
18362--18414	26	2.0	26	100	0	106	26	26	20	26	1.99
20834--20886	26	2.0	26	96	0	97	28	26	18	26	1.98
21714--21766	26	2.0	26	92	0	88	26	22	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19961--23046	890	3.5	887	88	4	4294	25	24	24	25	2.00
22618--22669	25	2.0	26	96	3	97	26	25	21	26	1.99
23077--23149	27	2.7	27	83	10	94	34	19	13	32	1.91
24874--24925	25	2.0	25	85	3	68	26	25	21	26	1.99
23110--28029	874	5.6	887	82	7	5551	25	24	24	25	2.00
26647--26699	26	2.0	26	100	0	106	26	26	20	26	1.99
29730--29782	26	2.0	26	96	0	97	28	26	18	26	1.98
28814--31299	893	2.8	890	92	1	4026	26	23	23	25	2.00
30623--30675	26	2.0	26	100	0	106	26	26	20	26	1.99
31305--31355	26	2.0	26	92	0	84	31	23	17	27	1.97
32122--32174	26	2.0	26	92	0	88	24	26	20	28	1.99
33027--33078	27	1.9	27	88	0	77	30	23	17	28	1.97
31437--37071	907	6.3	903	85	4	7041	25	24	23	25	2.00
33926--33978	26	2.0	26	92	0	88	30	26	18	24	1.98
34835--34874	19	2.1	19	100	0	80	27	25	17	30	1.97
35707--35756	26	1.9	26	95	0	91	24	30	18	28	1.97
36597--36649	26	2.0	26	92	0	88	26	22	20	30	1.98

Tables:   1

The End!