genome.fa.s226.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168051.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_301, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37020

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2552--2688	4	33.5	4	68	19	52	66	3	1	28	1.17
2458--2574	43	2.7	43	73	21	102	70	4	3	22	1.20
2544--2641	26	3.9	26	73	15	80	69	3	0	27	1.03
2695--2730	6	6.2	6	87	6	56	83	0	0	16	0.65
3765--3818	26	2.1	26	96	0	99	27	25	20	25	1.99
3437--5351	887	2.2	883	90	1	2947	25	24	24	25	2.00
5389--5441	26	2.0	26	92	0	88	24	24	22	28	2.00
4629--6159	751	2.1	740	88	3	2251	26	22	23	27	2.00
5370--8221	892	3.2	896	86	4	3913	25	23	24	26	2.00
8086--8134	26	1.9	25	88	12	73	26	26	20	26	1.99
10554--10606	26	2.0	26	92	0	88	26	26	18	28	1.98
11455--11507	26	2.0	26	92	0	88	26	22	20	30	1.98
9386--15222	894	6.6	891	84	5	6957	25	24	24	25	2.00
12348--12400	26	2.0	26	96	0	97	28	26	18	26	1.98
14109--14160	26	2.0	26	92	0	86	26	23	19	30	1.98
13240--15047	882	2.0	879	86	3	2547	26	24	23	25	2.00
14988--15040	26	2.0	26	96	0	97	26	24	20	28	1.99
15791--15843	26	2.0	26	92	0	88	28	24	18	28	1.98
16693--16744	25	2.0	26	88	3	79	26	21	25	26	1.99
15223--28232	889	14.7	875	80	8	13393	25	23	23	26	2.00
18469--18521	26	2.0	26	92	0	88	28	26	16	28	1.97
19370--19421	26	2.0	25	88	3	77	28	26	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21124--21176	26	2.0	26	92	7	90	26	22	20	30	1.98
22014--22090	26	3.0	26	82	0	82	28	19	19	32	1.96
22897--22949	26	2.0	26	88	0	79	30	24	18	26	1.98
25526--25575	26	1.9	26	87	0	73	24	24	24	28	2.00
24662--28291	887	4.1	886	81	7	4110	26	23	23	26	2.00
26410--26462	26	2.0	26	96	0	97	24	26	22	26	2.00
28207--28258	25	2.0	26	92	3	88	28	25	19	26	1.98
27516--30419	771	3.8	773	88	3	4167	28	24	21	26	1.99
30350--30642	162	1.8	161	85	3	410	17	24	28	29	1.97
31635--31664	12	2.5	12	100	0	60	13	26	20	40	1.89
32311--32363	26	2.0	26	92	0	88	26	22	20	30	1.98
30659--37020	897	7.2	890	82	6	7258	25	24	24	26	2.00
36708--36760	26	2.0	26	88	0	79	33	24	15	26	1.95

Tables:   1

The End!