genome.fa.s230.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168055.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_305, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36703

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2356--4309	682	2.9	682	90	1	2995	26	22	23	27	2.00
7709--7759	26	2.0	26	88	0	75	31	21	25	21	1.98
8610--8662	26	2.0	26	88	0	79	30	15	28	26	1.96
6111--9533	896	3.8	894	86	2	4645	25	23	24	26	2.00
9599--9927	171	1.9	170	80	4	376	22	28	30	19	1.98
9799--12689	714	4.1	715	86	3	3977	26	23	23	27	2.00
14462--14513	26	2.0	26	92	3	88	26	19	25	28	1.98
15360--15410	26	2.0	26	92	0	84	29	21	21	27	1.99
11918--30118	899	20.0	899	73	11	12230	25	24	24	25	2.00
17130--17182	26	2.0	26	96	0	97	24	20	28	26	1.99
18665--18717	26	2.0	26	96	0	97	28	20	24	26	1.99
19932--19982	26	2.0	26	88	0	75	29	13	25	31	1.94
19259--30118	902	11.9	899	74	11	7254	25	24	24	25	2.00
21731--21783	26	2.0	26	89	7	81	30	16	26	26	1.97
22159--22215	26	2.2	26	87	0	78	19	12	21	47	1.81
23549--23601	26	2.0	26	89	7	81	30	22	22	24	1.99
23796--24224	219	2.0	219	91	0	696	23	19	24	32	1.97
24670--24722	26	2.0	26	88	0	79	24	16	28	30	1.97
27324--27376	26	2.0	26	92	0	88	28	18	24	28	1.98
29105--29157	26	2.0	26	92	0	88	28	18	24	28	1.98
29995--30047	26	2.0	26	92	0	88	28	18	26	26	1.98
30726--30778	26	2.0	26	92	0	88	30	18	24	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29367--30849	731	2.0	731	96	0	2709	26	23	24	26	2.00
31621--31673	26	2.0	26	100	0	106	26	20	26	26	1.99
30024--32548	895	2.8	895	89	2	3773	25	24	24	25	2.00
31783--33258	709	2.1	713	88	3	2184	25	23	23	27	2.00
34121--34173	26	2.0	26	92	0	88	28	18	26	26	1.98
35021--35073	26	2.0	26	96	0	97	26	18	26	28	1.98
32502--35940	889	3.8	895	88	3	4919	25	24	24	25	2.00

Tables:   1

The End!