genome.fa.s240.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168065.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_314, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35663

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389--418	15	2.0	15	93	0	51	43	40	0	16	1.48
790--824	18	1.9	18	88	0	52	25	8	17	48	1.75
1595--6771	181	28.8	181	75	8	3519	39	8	10	41	1.68
3544--3923	194	1.9	197	83	4	489	37	7	11	43	1.69
1924--17605	541	29.4	537	72	12	3554	40	8	9	41	1.68
6633--6935	161	1.9	161	86	4	441	38	7	8	44	1.65
6796--7105	167	1.9	165	80	9	362	39	7	10	42	1.67
7657--10954	181	18.5	180	75	8	2318	40	7	9	41	1.66
8845--8878	17	1.9	18	88	5	52	47	5	14	32	1.69
10134--10431	164	1.8	166	84	5	417	39	5	10	44	1.63
10417--10463	18	2.7	18	86	3	60	46	2	12	38	1.54
10482--10954	182	2.6	181	80	4	447	39	8	8	43	1.66
10959--14358	181	19.0	179	76	7	2437	40	8	9	41	1.67
14544--15060	181	2.9	177	75	10	490	42	9	7	40	1.66
14943--15232	158	1.8	158	81	2	359	44	8	9	37	1.67
15102--22272	181	39.7	181	71	11	2695	40	8	9	41	1.69
10980--22217	723	15.7	710	71	11	4773	40	8	9	41	1.68
18197--18229	18	1.9	17	88	11	50	48	6	6	39	1.53
17914--18414	182	2.7	183	81	4	523	40	7	9	41	1.67
18431--22310	181	21.6	181	76	6	2992	40	8	9	41	1.68
18431--22310	361	10.8	357	76	7	2633	40	8	9	41	1.68
22560--22606	18	2.7	18	74	12	53	40	12	4	42	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22565--23139	178	3.2	178	74	10	440	38	10	9	41	1.72
23100--23322	120	1.9	119	85	2	313	32	13	7	46	1.71
22926--23503	297	1.9	295	80	4	667	38	10	8	42	1.70
23200--23694	182	2.7	180	83	3	609	40	10	8	40	1.69
23608--23803	101	2.0	100	84	5	261	37	11	6	43	1.67
22941--24153	457	2.6	459	80	7	1055	39	10	8	41	1.70
23708--26748	181	17.0	180	77	6	2398	41	9	8	40	1.68
23708--33434	361	26.8	358	67	14	2322	41	9	8	40	1.68
26400--27139	398	1.9	392	81	5	889	41	9	9	39	1.71
26770--28150	181	7.7	181	76	8	950	41	10	8	40	1.69
26216--27295	574	1.9	572	81	4	1287	40	9	9	40	1.70
28263--28658	181	2.2	178	81	7	453	41	9	7	41	1.65
29005--29339	185	1.8	179	84	7	451	42	8	8	40	1.66
29501--33507	181	22.3	181	75	8	2619	41	9	8	40	1.68
33390--33640	133	1.9	133	86	1	360	43	9	7	39	1.66
33512--33964	178	2.6	176	78	6	464	41	8	7	41	1.64
33811--34140	163	2.0	160	79	5	349	38	8	8	44	1.65
34042--35012	179	5.4	179	76	7	743	43	9	7	39	1.67
35117--35663	178	3.1	175	79	6	494	40	10	8	40	1.69

Tables:   1

The End!