genome.fa.s241.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168066.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_315, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35548

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2181--2505	162	2.0	162	87	10	479	39	11	8	39	1.73
2650--3453	180	4.5	175	74	11	607	39	7	9	42	1.67
4090--8819	181	26.4	179	74	8	3089	40	9	9	40	1.70
8762--8892	67	2.0	66	86	1	181	45	9	12	32	1.73
8900--8932	18	1.9	17	88	11	50	48	3	6	42	1.43
8858--10257	181	7.9	180	73	10	814	39	8	9	42	1.68
9091--9736	338	1.9	340	80	7	767	37	8	10	43	1.69
9432--10164	180	4.1	182	77	7	555	39	8	9	42	1.68
9485--10338	361	2.4	361	80	2	892	39	8	9	42	1.68
10779--11395	328	1.9	323	78	7	676	41	10	9	37	1.73
11095--12065	367	2.7	355	77	9	917	42	8	10	39	1.68
11094--16835	181	32.4	177	70	13	1589	40	8	10	41	1.69
11983--12264	152	1.8	154	87	1	424	41	7	10	40	1.67
11809--12425	332	1.9	332	81	3	749	42	7	10	39	1.68
12173--13221	528	2.0	528	80	5	1170	40	8	9	41	1.67
13148--13473	157	2.1	157	82	6	383	41	7	12	39	1.71
13620--16862	181	18.1	181	74	10	2105	39	8	10	41	1.69
13841--13885	3	15.0	3	86	9	65	35	0	0	64	0.94
13675--14062	194	2.0	194	84	4	514	40	7	10	42	1.67
16861--17350	181	2.7	174	79	8	524	43	8	8	39	1.66
17373--23947	181	36.7	180	76	6	4800	40	8	10	41	1.69
20982--21031	16	2.8	19	74	20	54	44	8	12	36	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23976--28431	181	24.8	178	72	13	555	40	7	9	41	1.67
25102--25141	16	2.6	15	81	18	55	52	5	7	35	1.51
24967--25284	169	1.9	169	82	3	399	41	6	9	41	1.64
25627--30311	181	26.1	175	74	10	1366	40	8	9	41	1.68
27064--27096	18	1.9	17	88	11	50	48	6	6	39	1.53
23951--31404	362	20.8	360	75	8	4975	39	8	9	42	1.68
30531--30986	181	2.5	180	78	7	419	41	8	8	41	1.67
31019--31412	178	2.2	180	79	4	431	36	7	12	43	1.72
31469--32266	181	4.4	180	75	4	524	41	8	10	39	1.69
31432--32266	360	2.3	356	79	4	885	41	8	10	39	1.69
32122--32409	143	2.0	143	83	4	357	45	6	11	36	1.67
32568--32611	22	2.0	22	100	0	88	45	9	9	36	1.68
32632--34404	181	9.8	181	76	7	1403	40	8	9	41	1.67
35260--35314	21	2.6	21	77	11	60	18	23	32	25	1.97

Tables:   1

The End!