genome.fa.s25.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167850.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_120, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77631

Tables:   1   

This is table  1  of  1  ( 101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1249--1352	53	2.0	53	88	0	154	36	10	7	45	1.68
1305--2414	181	6.2	179	74	7	676	40	10	8	40	1.70
1989--2022	17	1.9	18	88	5	52	41	8	2	47	1.50
2474--4402	181	10.8	181	74	6	1331	40	9	9	40	1.70
3342--3388	17	2.6	19	80	16	64	46	10	0	42	1.38
3336--4399	541	2.0	541	80	5	1191	40	8	8	41	1.67
4386--4441	26	2.2	26	93	0	94	51	3	3	41	1.36
4629--5729	180	6.1	179	75	5	819	41	9	8	41	1.67
4884--5679	363	2.2	360	80	6	880	40	9	7	41	1.66
5900--6346	180	2.5	177	81	6	467	41	9	7	41	1.65
7007--7333	181	1.8	181	83	6	439	43	10	7	38	1.68
8019--8192	94	1.9	94	85	0	240	43	9	8	37	1.69
8126--9164	357	2.9	355	78	8	1034	39	8	8	42	1.68
8126--9171	178	5.8	179	77	8	824	39	8	8	42	1.67
9210--10817	181	8.9	182	75	6	968	42	9	8	39	1.68
10101--10133	18	1.9	17	88	11	50	42	6	3	48	1.43
9202--10817	719	2.2	716	78	5	1657	42	9	8	39	1.68
10669--10942	148	1.9	148	85	2	390	44	9	6	39	1.62
10817--11671	181	4.8	181	76	8	703	43	8	7	40	1.63
10880--11671	359	2.2	361	78	6	806	44	8	7	40	1.62
11614--11752	69	2.0	70	90	1	217	46	7	6	39	1.57
12049--16409	544	8.1	532	70	13	1806	39	8	10	40	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12045--14447	181	13.4	179	74	9	1624	40	8	10	40	1.70
14464--16409	180	10.8	180	73	10	1210	39	8	10	41	1.70
15163--15474	169	1.8	168	82	9	402	39	7	10	41	1.69
16999--17855	179	4.8	180	74	8	426	38	8	10	43	1.70
17362--17787	174	2.4	180	79	8	435	36	7	10	44	1.69
17713--18040	169	1.9	168	81	6	394	39	8	11	40	1.72
17555--18223	350	1.9	342	80	8	753	38	8	10	42	1.69
18231--32028	359	38.3	359	71	11	5065	40	8	10	41	1.69
18398--32028	181	75.7	179	72	11	6858	40	8	10	41	1.69
20868--22087	179	6.7	182	72	11	432	39	7	9	42	1.67
22423--22496	24	3.1	24	74	18	64	43	16	10	29	1.82
18251--31978	721	19.1	715	72	11	6221	40	8	10	41	1.69
22474--31957	359	26.4	359	73	10	5450	39	8	10	41	1.70
32045--32691	181	3.6	181	78	8	572	42	7	8	40	1.64
33000--33038	18	2.2	17	86	13	53	41	5	10	43	1.61
32879--34373	178	8.4	180	72	11	536	39	8	10	42	1.69
33613--34373	181	4.2	178	78	5	678	40	7	10	41	1.67
33700--34413	178	4.0	177	76	6	605	40	7	10	41	1.67
34561--35429	361	2.4	363	77	8	791	39	7	9	43	1.66
34417--35445	181	5.7	178	75	7	677	39	7	10	42	1.68
34417--35445	182	5.7	180	76	5	790	39	7	10	42	1.68
35457--37670	181	12.4	180	77	6	1741	40	8	9	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37709--39789	181	11.6	180	76	7	1467	41	7	9	40	1.67
37954--39746	535	3.3	540	77	7	1249	41	8	9	40	1.68
39814--41340	181	8.4	179	76	5	1043	42	9	7	40	1.67
41023--41363	180	1.9	178	80	5	391	43	8	8	39	1.66
41402--41741	180	1.9	180	82	3	425	40	7	10	42	1.67
41404--42065	337	2.0	335	81	4	771	39	7	9	43	1.66
41740--43066	180	7.3	180	71	11	605	40	7	9	42	1.65
42569--43021	177	2.5	175	77	8	394	43	6	8	41	1.61
43087--47086	180	22.2	178	73	9	2179	40	7	9	42	1.67
43098--47095	542	7.4	533	76	9	2353	40	7	9	42	1.67
43424--46888	539	6.4	532	74	9	1455	40	7	9	42	1.66
44406--47095	181	14.9	178	74	10	1082	39	7	9	42	1.67
43087--47081	361	11.1	358	74	9	2693	40	7	9	42	1.67
46966--47197	121	2.0	120	85	5	321	37	7	9	46	1.63
46786--47378	297	2.0	298	81	6	691	37	7	10	43	1.69
47087--48834	181	9.8	179	76	9	1403	39	8	10	42	1.69
46605--47571	478	2.0	478	82	6	1154	38	7	10	43	1.67
47680--47717	20	1.9	20	88	0	58	34	2	2	60	1.24
47680--47723	20	2.3	19	84	7	54	36	2	2	59	1.23
47083--48835	715	2.4	715	79	6	1832	39	8	9	42	1.69
47087--48835	539	3.3	527	80	7	1807	39	8	10	42	1.69
48771--48908	73	1.9	73	84	3	188	37	7	7	47	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48597--49088	253	1.9	253	81	4	598	41	7	7	42	1.63
48862--49320	181	2.5	179	81	6	523	42	6	9	40	1.64
49178--49463	144	2.0	144	82	4	353	39	5	12	41	1.67
49625--49657	17	2.0	17	88	5	50	42	0	12	45	1.41
49756--50125	181	2.0	180	79	7	394	40	7	10	41	1.67
51322--51601	144	1.9	146	80	8	331	41	9	7	40	1.67
51467--53157	181	9.4	180	76	7	1314	41	10	8	39	1.71
51581--53080	357	4.2	358	74	9	856	41	10	8	39	1.71
51516--53031	540	2.8	530	80	6	1527	41	10	8	39	1.70
53087--53220	67	2.0	67	92	0	223	36	12	8	41	1.75
52925--53401	244	1.9	247	81	5	574	41	11	6	40	1.68
53312--53518	103	2.0	102	84	4	265	38	10	6	44	1.64
53415--53988	180	3.2	180	74	6	533	40	10	7	40	1.69
54048--54092	14	3.5	14	71	22	53	42	0	2	55	1.12
54049--54105	24	2.4	24	100	0	114	43	0	3	52	1.18
54418--54653	120	2.0	119	87	2	339	35	12	8	44	1.72
54536--54861	181	1.8	181	82	4	424	41	11	7	39	1.69
54918--59354	181	24.8	180	74	8	2721	41	9	8	40	1.68
56117--56443	165	2.0	165	79	8	353	42	10	7	39	1.68
54918--60552	542	10.6	540	74	10	3282	41	9	8	40	1.68
56270--59354	361	8.6	360	76	9	2099	41	9	8	40	1.68
59654--60552	180	5.0	176	76	8	699	41	9	7	41	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70550--72423	181	10.5	180	75	6	1313	42	10	8	39	1.68
70549--72423	180	10.5	176	73	8	573	42	10	8	39	1.68
70641--72288	358	4.6	349	74	10	1007	42	9	7	39	1.67
72324--72578	136	1.9	134	91	6	417	41	8	8	41	1.65
72458--72922	181	2.6	178	79	5	472	41	9	7	41	1.64
72458--72978	181	2.9	181	77	5	425	42	9	8	39	1.66
72653--73271	341	1.8	342	81	5	777	42	9	7	39	1.67
72996--76000	181	16.9	178	73	10	1740	41	9	7	40	1.67
74044--74705	349	1.9	338	82	7	814	42	9	7	40	1.66
75189--75245	23	2.5	23	82	5	62	50	1	5	42	1.35
74430--75783	533	2.5	536	79	6	1280	41	8	8	41	1.66
75849--76158	160	1.9	160	79	2	345	41	7	8	42	1.63
76010--77567	181	8.6	173	71	14	707	41	9	8	40	1.69

Tables:   1

The End!