genome.fa.s263.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168088.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_335, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34053

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
558--1721	361	3.2	357	78	7	1038	41	7	9	41	1.66
586--4235	542	6.8	537	73	9	1312	39	8	9	42	1.68
1427--2067	344	1.9	341	81	3	795	39	7	9	43	1.66
2680--3009	180	1.8	180	83	5	443	37	8	7	46	1.64
558--8344	181	42.8	179	71	10	3182	39	8	10	41	1.69
716--4819	358	11.5	358	71	11	1239	39	8	9	42	1.68
8287--8401	35	3.1	35	62	20	81	40	6	6	46	1.56
8268--8419	75	2.0	75	97	0	286	39	5	7	47	1.56
8084--8597	257	2.0	255	79	6	560	38	7	9	44	1.66
8341--9443	178	6.2	175	75	9	821	40	7	10	42	1.66
8411--9419	181	5.7	180	76	8	549	39	7	10	42	1.67
9474--11050	180	8.8	180	75	7	1202	41	10	8	39	1.70
10884--11201	164	1.9	164	81	8	387	41	10	7	41	1.67
11047--12280	181	6.9	182	79	5	1116	40	9	8	41	1.68
11047--12280	361	3.4	359	80	5	1264	40	9	8	41	1.68
12127--12433	153	2.0	153	81	8	358	39	12	8	39	1.74
12305--13539	181	6.9	178	77	10	706	42	10	7	39	1.67
12304--16060	176	20.9	177	70	14	1563	42	9	8	39	1.68
13492--13584	45	2.1	45	87	4	134	48	5	6	39	1.52
13316--13738	226	1.9	221	83	4	553	41	8	7	42	1.64
13537--16064	177	14.3	178	72	12	1108	42	9	8	39	1.68
15745--16059	171	1.8	172	80	5	379	43	9	8	38	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16462--16754	164	1.8	164	82	5	380	44	8	6	39	1.62
16607--16986	181	2.1	183	79	5	414	44	8	6	40	1.61
18783--18835	23	2.2	25	83	6	65	49	18	11	20	1.78
19364--19398	16	2.2	16	94	0	61	42	11	14	31	1.81
24585--24882	155	1.9	155	81	2	357	43	8	9	38	1.68
24726--28944	181	23.4	179	73	10	2541	42	9	8	39	1.68
26287--26322	18	2.1	18	90	10	58	38	13	2	44	1.59
27363--27400	18	2.2	17	86	9	51	42	7	2	47	1.46
25413--28444	710	4.2	717	74	11	1664	42	9	8	39	1.67
27616--28449	360	2.3	361	80	3	926	42	9	8	39	1.67
27571--28944	553	2.5	543	79	7	1389	41	9	8	40	1.68
28336--28701	191	1.9	195	79	9	419	42	10	8	38	1.69
30202--32030	181	10.2	180	77	7	1521	40	9	9	40	1.70
30176--31985	361	5.0	358	76	8	1007	41	9	8	40	1.69
31892--32165	135	2.0	135	99	0	539	44	10	9	35	1.72
32038--34049	181	11.3	177	73	10	1218	42	10	7	39	1.69
32602--33646	356	2.9	347	76	9	957	42	10	7	39	1.68
32024--34053	536	3.8	530	81	6	1649	42	10	7	39	1.69

Tables:   1

The End!