genome.fa.s27.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167852.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_122, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77048

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
891--1296	177	2.3	179	78	8	416	40	10	8	40	1.71
1666--1711	23	2.0	23	100	0	92	34	21	8	34	1.84
1666--1719	23	2.3	23	90	6	74	38	22	7	31	1.82
9281--10591	181	7.3	181	79	5	1233	41	10	8	40	1.68
9285--14842	362	15.0	361	68	14	1519	41	10	8	40	1.68
9285--10594	543	2.4	539	81	3	1499	41	10	8	40	1.68
10518--10674	83	1.9	83	80	5	183	43	8	11	36	1.71
10694--11894	177	6.7	175	74	8	694	41	10	8	39	1.70
10694--11777	176	6.1	181	74	9	687	41	10	8	39	1.70
9893--11389	799	1.9	799	80	6	1801	41	9	8	40	1.67
10694--11894	539	2.2	535	81	5	1363	41	10	8	39	1.70
12395--12430	16	2.2	17	90	5	56	41	11	0	47	1.39
12383--12430	17	2.8	17	81	12	62	43	10	0	45	1.38
12368--12652	140	2.0	140	80	1	320	38	7	7	46	1.61
12507--14848	180	13.0	180	77	6	1941	41	9	8	40	1.68
12507--14848	364	6.5	360	78	6	2105	41	9	8	40	1.68
12523--27431	539	28.0	531	73	11	6182	41	9	8	40	1.68
14903--27433	181	70.2	180	73	10	7415	41	9	8	40	1.68
18919--19231	169	1.9	169	79	4	362	40	9	8	40	1.68
14934--27433	540	23.4	532	74	10	5601	41	9	8	40	1.68
23591--27360	716	5.3	720	74	11	1894	41	9	8	41	1.67
27464--28113	360	1.8	360	82	4	835	41	6	9	42	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28129--33037	181	27.4	181	77	7	3952	40	9	9	41	1.69
28129--33037	359	13.7	361	76	6	3659	40	9	9	41	1.69
33052--34016	181	5.4	180	73	10	686	41	9	8	40	1.68
33502--33925	182	2.3	181	80	5	455	43	8	8	39	1.66
34404--35602	178	6.7	178	78	8	786	41	9	8	40	1.69
34148--55425	538	39.4	538	75	9	12788	41	9	8	39	1.69
38468--38506	18	2.2	18	86	9	53	58	0	7	33	1.26
34147--55437	181	117.3	179	71	12	7869	41	9	8	39	1.69
39564--39626	30	2.1	30	100	0	126	50	0	12	36	1.41
39645--41154	180	8.5	179	76	8	894	40	10	7	41	1.69
42115--42394	154	1.8	153	83	5	368	42	9	7	40	1.66
42115--42430	154	2.0	154	80	8	354	44	8	7	39	1.64
42629--42653	11	2.3	11	100	0	50	64	0	0	36	0.94
43096--43142	17	2.9	16	78	12	51	57	6	0	36	1.24
43311--43648	165	2.0	165	84	5	432	42	8	9	39	1.68
43478--55425	361	33.0	359	73	10	6998	41	9	8	39	1.69
47711--47766	16	3.4	16	69	26	53	35	12	3	48	1.58
47696--47771	34	2.2	35	95	2	136	39	13	3	43	1.62
41181--55437	719	19.8	715	73	11	8242	41	9	8	39	1.69
52049--52081	18	1.9	17	88	11	50	39	6	6	48	1.53
52412--52444	17	2.0	17	88	5	50	39	9	0	51	1.34
53552--53918	192	1.9	195	81	7	442	42	10	8	38	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56452--60051	181	20.1	179	75	9	2341	41	9	8	40	1.69
60060--61448	183	7.7	181	75	8	912	41	10	8	39	1.68
60249--60898	356	1.8	358	80	4	796	40	9	8	41	1.69
56455--60020	358	10.0	360	73	10	1149	41	9	8	40	1.68
61075--61403	171	1.9	175	80	8	386	43	8	6	41	1.63
61884--64124	181	12.5	179	72	10	777	41	10	8	39	1.69
62259--62590	176	1.9	176	82	5	420	44	12	7	35	1.70
62515--62851	182	1.9	182	80	8	400	43	10	7	37	1.68
63175--64122	362	2.6	357	80	5	987	42	9	8	40	1.67
64081--64329	133	1.9	133	86	3	358	45	9	6	38	1.62
64470--66659	181	12.2	174	74	9	1140	42	10	8	39	1.68
64653--66659	362	5.6	359	75	8	1393	42	10	8	38	1.69
66509--66812	152	2.0	153	82	6	366	41	12	6	39	1.69
66677--69005	358	6.5	354	74	10	1504	41	9	8	40	1.66
66677--69005	178	13.0	179	75	7	1666	41	9	8	40	1.66
68114--68168	17	3.0	20	72	20	57	40	12	7	40	1.71
68759--68797	18	2.2	18	86	9	53	58	2	5	33	1.33
68876--69152	147	1.9	148	81	3	344	46	8	7	38	1.62
69000--71585	181	14.5	181	76	8	1937	40	9	8	41	1.68
72666--72701	16	2.1	17	90	10	56	38	11	5	44	1.63
71891--75248	180	18.7	181	75	7	2233	42	9	8	39	1.68
71891--75250	361	9.4	357	72	9	1793	41	9	8	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73284--75213	899	2.1	900	79	6	2066	42	9	8	39	1.68
75265--76261	171	5.7	168	75	15	479	41	9	8	40	1.67
76196--76228	15	2.2	15	94	0	57	36	3	6	54	1.41
76200--76238	15	2.6	15	87	0	51	41	7	2	48	1.45

Tables:   1

The End!