genome.fa.s273.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168098.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_344, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32976

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6340--6392	26	2.0	26	88	0	79	26	18	24	30	1.98
3820--7091	899	3.7	896	86	3	4566	25	23	24	26	2.00
7178--7230	26	2.0	26	85	0	70	30	20	20	28	1.98
7901--7953	26	2.0	26	92	0	88	30	22	18	28	1.98
9545--9597	26	2.0	26	96	0	97	26	22	24	26	2.00
8830--14129	881	6.0	894	86	3	7060	25	24	24	25	2.00
12213--12265	26	2.0	26	88	0	79	26	22	24	26	2.00
13094--13144	26	2.0	26	92	0	84	27	19	21	31	1.97
20653--20705	26	2.0	26	88	0	79	28	20	22	28	1.99
21548--21596	26	1.9	26	91	4	82	28	22	22	26	1.99
23326--23378	26	2.0	26	92	0	88	28	22	22	26	1.99
19492--24075	888	5.1	891	86	3	5955	26	23	23	25	2.00
24118--24169	26	2.0	26	96	0	95	23	21	30	25	1.99
24849--24901	26	2.0	26	96	0	97	26	18	26	28	1.98
25694--25746	26	2.0	26	96	0	97	26	22	24	26	2.00
24137--29020	871	5.6	868	80	9	5182	26	23	23	26	2.00
26519--26571	26	2.0	27	88	3	81	30	18	28	22	1.98
28291--28343	26	2.0	26	92	0	88	26	20	24	28	1.99
26519--29017	885	2.8	893	86	3	3519	26	23	24	26	2.00
29781--29834	17	3.2	16	82	10	63	18	0	29	51	1.46
30082--30110	3	9.7	3	100	0	58	68	0	0	31	0.89
31199--31227	14	2.1	14	100	0	58	13	0	6	79	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31412--31620	88	2.4	88	86	1	285	42	17	19	21	1.90
31627--31687	23	2.7	23	85	7	72	31	18	24	26	1.97
31532--31906	133	2.8	130	81	6	396	37	18	20	22	1.94
32076--32107	15	2.3	15	89	10	50	21	0	9	68	1.17
32366--32460	41	2.3	40	82	10	104	36	15	18	28	1.92
32603--32945	33	10.5	32	80	10	326	34	16	20	29	1.94
32603--32944	66	5.2	65	83	6	408	34	16	20	29	1.94

Tables:   1

The End!