genome.fa.s274.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168099.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_345, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32804

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2241--3068	412	2.0	412	91	0	1334	34	21	17	26	1.95
5872--5924	26	2.0	26	88	0	79	28	22	20	28	1.99
4947--8553	894	4.1	893	85	3	4572	26	23	23	26	2.00
8620--11977	895	3.7	894	84	3	4163	25	23	24	26	2.00
10736--10785	26	1.9	26	87	0	73	30	26	18	26	1.98
12849--12878	12	2.6	11	94	5	51	90	0	10	0	0.47
14149--14492	33	10.5	33	81	8	384	29	20	16	34	1.94
14146--14492	66	5.3	66	84	6	440	29	20	16	33	1.94
14149--14492	131	2.6	129	86	7	455	29	20	16	34	1.94
14957--14986	13	2.2	13	94	5	51	63	10	0	26	1.26
15244--15306	23	2.8	22	79	9	65	26	23	19	30	1.98
15250--15315	22	3.0	22	76	10	62	28	22	18	30	1.97
15174--15527	133	2.7	133	84	3	448	21	20	19	37	1.94
15383--15437	23	2.4	23	84	3	67	29	23	18	29	1.98
15428--15650	86	2.6	87	87	4	324	20	21	19	39	1.93
15835--15875	14	2.9	15	82	10	59	78	9	0	12	0.98
15835--15877	13	3.1	14	83	10	61	76	9	0	13	1.01
15835--15900	23	2.8	23	79	9	71	78	7	3	10	1.05
17190--17242	17	3.1	17	81	5	63	50	28	0	20	1.48
18885--18937	26	2.0	26	88	0	79	28	20	22	28	1.99
18213--20543	898	2.6	897	88	2	3396	26	23	23	26	2.00
19988--21121	580	2.0	580	90	1	1788	29	22	20	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20564--31209	897	12.0	895	86	3	13716	25	23	24	26	2.00
23925--23977	26	2.0	26	92	0	88	26	22	22	28	1.99
24821--24873	26	2.0	26	88	0	79	26	20	22	30	1.98
30165--30217	26	2.0	26	96	0	97	30	24	18	26	1.98
30433--31975	772	2.0	773	86	2	2141	27	24	22	25	2.00

Tables:   1

The End!