genome.fa.s287.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168112.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_357, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31808

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3--4604	181	25.6	180	73	11	2664	39	8	9	42	1.69
707--1393	182	3.8	179	77	8	463	39	8	10	41	1.71
3--4508	361	12.5	358	72	12	1592	39	8	9	42	1.68
3206--3249	23	2.0	23	86	4	63	36	2	0	61	1.09
2459--4089	180	9.1	179	76	7	998	38	8	10	42	1.70
4478--4736	137	1.9	138	80	8	305	41	6	10	41	1.66
4114--5096	492	2.0	497	83	4	1240	38	8	10	42	1.71
4611--8367	181	21.0	179	76	6	2914	39	8	10	41	1.70
8464--9941	181	8.2	181	75	6	1154	41	9	8	39	1.70
17850--23376	181	30.4	179	72	10	2812	41	10	8	40	1.69
17844--31808	361	38.6	360	69	13	3202	41	9	8	40	1.68
17850--20390	539	4.7	534	77	8	1987	41	9	8	40	1.69
20200--20746	288	1.9	288	79	5	624	41	11	8	38	1.72
20878--20913	16	2.2	17	90	5	56	41	11	0	47	1.39
20866--20913	17	2.8	17	81	12	62	43	10	0	45	1.38
20860--21134	139	2.0	140	81	2	329	38	8	7	45	1.62
20992--23376	179	13.3	180	76	8	1934	41	10	8	39	1.69
23387--27118	181	20.9	180	75	8	2517	41	10	7	40	1.68
23387--31808	719	11.8	717	73	10	4727	41	9	8	40	1.68
23415--31708	181	46.6	177	71	12	896	41	9	8	40	1.68
27543--31798	180	23.8	181	74	9	2505	40	9	8	40	1.69
27124--31798	360	13.1	361	74	10	3029	41	9	8	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27542--31808	181	23.9	175	72	12	1516	40	9	8	40	1.69
30581--30912	171	1.9	171	81	4	402	41	9	8	40	1.68

Tables:   1

The End!