genome.fa.s289.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168114.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_359, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31710

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6--613	180	3.5	179	78	10	660	42	9	9	39	1.69
284--593	168	1.8	170	84	2	428	41	9	6	41	1.63
485--748	145	1.8	142	84	2	357	45	8	9	35	1.68
627--1121	181	2.7	181	78	3	476	41	8	10	40	1.69
1649--13214	181	63.6	181	69	12	4072	39	8	9	41	1.69
1650--18980	537	32.1	535	69	13	3926	40	8	9	41	1.69
1743--18824	897	19.0	895	72	11	7020	40	8	9	41	1.69
5872--6732	476	1.8	472	81	3	1082	40	8	10	41	1.69
6378--8914	530	4.7	532	78	7	1662	39	8	9	41	1.69
6288--15108	535	16.4	532	72	12	3798	40	8	9	41	1.69
12017--12050	17	2.0	17	88	0	50	52	0	8	38	1.33
13059--13338	154	1.8	153	82	6	361	41	8	11	38	1.72
13059--13366	153	2.0	153	80	7	349	40	8	11	38	1.72
13213--15111	180	10.6	180	77	7	1506	42	8	9	40	1.67
12697--13692	510	1.9	515	82	4	1244	40	8	10	40	1.68
13375--15030	718	2.3	713	78	6	1599	41	7	9	41	1.66
15107--18982	180	21.6	181	77	6	2973	40	8	9	41	1.68
18688--19289	306	2.0	305	79	9	645	38	7	10	42	1.69
18988--19421	181	2.4	178	79	4	460	39	7	8	44	1.63
19541--19871	181	1.8	180	83	1	439	40	7	12	39	1.71
19992--20457	179	2.6	177	78	7	512	41	7	9	41	1.66
20329--20579	133	1.9	133	87	1	369	39	7	9	43	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20150--20763	310	2.0	314	81	7	721	40	7	8	42	1.66
20462--24455	181	22.3	179	74	8	2459	40	8	9	41	1.68
21575--30244	181	47.8	179	69	13	2547	40	8	9	41	1.69
20462--30244	360	27.0	358	69	13	2753	40	8	9	41	1.69
24322--24615	160	1.8	161	79	3	342	41	7	11	39	1.69
25814--30244	181	24.5	181	74	8	2933	40	8	10	40	1.69
27238--30244	718	4.2	720	78	6	2762	40	8	10	40	1.69
27238--30244	539	5.6	533	77	7	2273	40	8	10	40	1.69
29998--30524	277	1.9	277	83	4	677	41	8	11	38	1.71
30251--30750	182	2.8	178	81	4	590	41	8	10	40	1.69
30630--30847	119	1.8	118	85	2	303	46	7	12	32	1.71
31375--31421	19	2.7	18	74	12	53	42	4	12	40	1.63

Tables:   1

The End!