genome.fa.s297.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168122.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_366, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30758

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4148--4399	132	1.9	132	82	4	321	40	5	8	45	1.59
5378--7812	180	13.6	179	71	13	541	40	8	9	41	1.67
5375--8873	181	19.6	177	74	9	2234	40	8	9	41	1.68
5047--8873	359	10.8	361	76	8	2884	40	8	9	41	1.68
7893--8213	166	1.9	166	80	1	374	40	9	9	40	1.70
10075--12978	181	15.9	181	70	11	1018	40	8	9	40	1.69
10069--13124	363	8.4	359	73	11	1832	40	8	9	40	1.69
11181--11222	21	2.0	21	95	0	75	30	4	4	59	1.39
11229--13124	539	3.5	535	76	7	1665	40	8	9	40	1.69
13478--14722	180	7.0	180	75	7	869	41	8	8	40	1.66
13653--14570	361	2.6	344	78	6	880	41	8	7	41	1.65
14629--14873	134	1.8	134	84	3	332	42	9	8	39	1.68
14965--15579	333	1.8	335	80	5	744	41	8	9	40	1.67
15278--18133	730	4.0	716	77	7	1957	41	9	8	40	1.70
16532--17860	176	7.4	179	75	8	464	41	9	9	39	1.70
15279--18133	359	7.9	357	76	9	2057	41	9	8	40	1.69
15279--18163	180	16.0	177	73	11	1586	41	9	8	40	1.70
18093--18229	67	2.0	67	85	2	186	40	11	5	42	1.65
18179--18829	182	3.6	176	75	10	543	43	8	6	41	1.62
18861--19824	181	5.4	180	72	11	570	40	7	9	42	1.65
19826--23759	181	22.2	175	72	11	1296	40	8	9	41	1.69
20459--20774	166	1.9	166	81	3	377	40	9	9	40	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21338--22642	363	3.6	360	77	6	851	40	8	9	40	1.69
19994--23759	362	10.6	355	72	9	1808	40	8	9	41	1.68
23634--23905	145	1.9	146	87	2	404	40	8	8	42	1.66
23341--24264	505	1.8	502	80	5	1123	40	8	9	40	1.70
23745--25641	180	10.6	181	73	10	1068	39	8	9	41	1.68
24502--24910	177	2.3	177	80	8	426	41	8	8	42	1.64
24329--25641	717	1.8	715	84	6	1774	39	8	9	42	1.67
25934--30539	181	25.6	181	71	10	2071	39	8	10	41	1.70
28371--28407	18	2.0	19	89	5	58	40	8	8	43	1.64
28353--29297	521	1.8	523	81	4	1190	39	8	10	41	1.70
29298--30531	182	6.7	178	73	12	706	40	9	9	40	1.71

Tables:   1

The End!