genome.fa.s298.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168123.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_367, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30707

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
745--777	17	2.0	17	88	5	50	51	0	9	39	1.34
1081--1122	18	2.6	16	85	11	50	45	4	7	42	1.52
910--1540	160	3.9	156	71	15	394	42	6	8	42	1.61
1786--1844	21	2.6	23	73	10	59	38	1	0	59	1.08
139--3458	976	3.2	987	78	13	2655	40	7	9	42	1.65
145--2882	163	16.2	160	70	17	663	40	6	9	43	1.63
41--4858	180	27.9	170	70	15	1083	40	7	9	42	1.66
128--4858	363	13.7	359	71	14	1122	40	7	9	42	1.65
1405--4860	179	19.7	175	72	11	1286	40	7	9	42	1.67
1406--4875	180	19.8	177	73	12	2010	40	7	9	42	1.67
4746--4994	133	1.9	134	86	4	360	38	7	8	45	1.63
4879--8871	181	22.3	179	74	9	2475	40	8	9	41	1.68
4879--9504	721	6.5	709	74	10	2558	40	8	9	41	1.68
8461--8803	173	2.0	173	81	4	397	41	6	9	41	1.65
8713--9020	162	1.9	161	82	5	388	40	6	11	41	1.65
8875--9469	177	3.3	180	80	5	605	38	7	10	43	1.68
8875--9504	182	3.5	181	80	4	580	39	7	10	42	1.68
9480--9523	18	2.4	19	92	7	81	52	11	4	31	1.57
9286--9672	201	1.9	202	79	8	441	40	8	9	41	1.68
11579--11612	17	2.0	17	88	0	50	35	8	5	50	1.58
11723--14651	181	16.4	180	76	7	2267	41	8	9	41	1.67
16552--16578	14	1.9	14	100	0	54	25	7	0	66	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16565--17039	181	2.6	179	78	5	513	42	8	9	39	1.68
16937--17163	124	1.9	119	83	6	294	45	8	13	32	1.73
17661--17707	19	2.7	18	74	12	53	42	4	12	40	1.63
17999--29066	356	31.0	361	69	14	3079	41	9	8	40	1.68
18172--21818	359	10.2	358	73	10	1167	41	9	8	40	1.68
17953--21822	180	21.6	181	74	8	2544	41	9	8	40	1.68
21986--22018	18	1.9	17	88	11	50	39	6	6	48	1.53
21975--22300	181	1.8	181	84	1	447	42	9	7	39	1.67
22718--23046	182	1.8	183	79	2	392	45	7	6	40	1.59
22958--23400	180	2.5	178	80	6	484	41	8	9	41	1.67
22608--24409	179	9.9	178	71	12	701	41	9	8	40	1.67
23428--23470	21	2.0	21	86	8	61	39	13	6	39	1.72
23247--23645	200	2.0	202	83	4	504	40	10	8	40	1.71
23086--23820	379	1.9	379	80	8	836	40	9	8	40	1.69
25520--25833	158	2.0	156	80	7	359	42	7	9	40	1.66
25686--29066	181	18.9	179	74	10	1934	42	9	7	40	1.67
29995--30475	180	2.7	180	79	7	492	42	8	7	41	1.63

Tables:   1

The End!