genome.fa.s300.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168125.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_369, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30605

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
219--4459	181	23.7	180	72	12	1516	40	8	9	41	1.68
219--10233	900	11.1	893	70	12	2483	40	8	9	41	1.68
221--5290	362	14.2	358	73	9	2779	40	8	9	41	1.68
4645--5097	181	2.5	179	81	6	497	38	7	10	43	1.67
5882--6210	171	1.9	173	79	8	373	41	6	9	42	1.64
5836--10274	181	24.5	181	73	9	2546	40	8	10	40	1.69
7236--10274	180	17.0	181	76	7	2351	40	8	10	40	1.69
7263--10274	361	8.4	362	76	7	2387	40	8	10	40	1.69
10179--10374	101	2.0	101	85	5	272	43	6	12	37	1.69
10027--10554	277	1.9	278	81	3	652	41	8	11	38	1.71
10281--10781	182	2.8	180	81	3	594	41	7	10	40	1.69
10660--10882	120	1.9	119	85	2	313	46	7	13	32	1.71
10479--11056	297	1.9	298	80	4	673	42	8	10	38	1.71
10793--11416	180	3.5	179	76	6	489	41	9	10	37	1.73
11079--11410	181	1.8	180	81	5	411	41	9	9	38	1.71
11378--11424	19	2.7	18	74	12	53	42	4	12	40	1.63
12280--15631	181	18.7	181	76	6	2454	42	9	7	40	1.66
14418--14450	18	1.9	17	88	11	50	42	9	0	48	1.35
12396--18647	711	8.8	705	72	11	2430	42	9	7	40	1.66
12327--24036	362	32.4	360	69	13	3948	41	9	8	40	1.67
16172--16218	18	2.7	18	86	3	60	38	12	2	46	1.54
15681--18994	181	18.6	180	75	8	2183	41	9	7	40	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17762--17795	17	1.9	18	88	5	52	32	14	5	47	1.69
19095--19133	18	2.1	18	85	4	51	58	0	5	35	1.20
19016--24038	181	28.0	180	74	8	2968	41	10	8	39	1.69
19613--20198	164	3.4	167	78	8	500	43	10	7	38	1.68
24630--25298	199	3.3	198	78	6	657	40	11	12	35	1.80
24656--25388	199	3.7	200	77	5	614	41	11	12	34	1.79
25623--25652	15	2.0	15	93	0	51	16	0	40	43	1.48
25946--27868	180	10.8	181	77	6	1552	40	9	9	40	1.69
25970--27868	357	5.3	358	77	7	1447	40	9	9	41	1.69
28434--30581	181	11.9	181	76	6	1770	41	9	9	39	1.70
28499--30581	359	5.8	361	76	7	1773	41	9	9	39	1.69

Tables:   1

The End!