genome.fa.s304.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168129.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_372, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30473

Tables:   1   

This is table  1  of  1  ( 93 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1269--1312	21	2.1	21	83	8	54	47	2	2	47	1.27
1347--1410	23	2.8	22	81	15	69	53	0	0	46	1.00
1364--1428	24	2.7	24	85	7	78	52	0	0	47	1.00
1361--1407	10	4.9	10	76	7	53	51	0	0	48	1.00
1361--1401	6	6.8	6	79	20	50	51	0	0	48	1.00
1350--1426	31	2.5	29	78	17	93	53	0	0	46	1.00
1568--1595	14	2.0	14	100	0	56	50	0	0	50	1.00
1765--1862	34	3.0	32	81	10	119	48	0	0	51	1.00
1769--1866	16	6.1	16	76	14	87	50	0	0	50	1.00
1761--1858	41	2.3	42	84	13	130	48	0	0	51	1.00
1790--1868	41	1.9	41	84	5	106	49	0	0	50	1.00
2206--2257	18	2.9	18	82	5	61	46	1	0	51	1.12
2745--2858	35	3.3	34	77	14	92	50	1	2	44	1.26
2762--2818	19	3.2	18	78	14	64	54	0	0	45	0.99
3144--3190	16	2.9	17	90	9	80	65	0	0	34	0.93
3144--3190	3	16.0	3	87	12	71	65	0	0	34	0.93
3203--3307	24	4.3	24	70	17	65	51	2	0	44	1.22
3254--3305	26	2.0	27	84	3	70	53	3	0	42	1.19
3240--3308	12	5.4	13	74	19	56	53	4	0	42	1.20
3249--3292	18	2.5	20	75	24	53	56	4	0	38	1.20
3901--3941	14	3.0	14	80	16	50	53	2	2	41	1.27
4182--4255	23	3.1	23	75	21	73	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4195--4255	13	5.0	13	69	27	53	50	0	0	49	1.00
4208--4268	19	3.3	19	71	17	56	52	0	0	47	1.00
4188--4268	37	2.4	36	80	14	91	53	0	0	46	1.00
4206--4306	22	4.7	22	76	12	86	48	0	1	49	1.12
4339--4397	12	4.9	12	73	20	52	54	0	0	45	0.99
5352--5392	11	3.8	10	84	15	55	9	0	4	85	0.73
5344--5393	22	2.3	21	78	15	66	8	0	10	82	0.86
5595--5630	15	2.4	15	95	0	63	72	0	2	25	0.98
9720--9767	24	2.0	24	84	8	62	70	2	22	4	1.15
10118--10200	9	9.6	9	87	6	118	79	0	10	9	0.94
10118--10200	26	3.2	26	86	5	114	79	0	10	9	0.94
10118--10200	35	2.4	35	90	6	125	79	0	10	9	0.94
10157--10203	13	3.5	14	80	19	64	80	0	10	8	0.89
11328--11393	21	3.1	21	84	6	89	31	10	21	36	1.87
11416--11516	42	2.4	43	83	9	120	38	9	19	31	1.85
11827--12068	42	5.7	42	81	4	272	24	11	20	42	1.86
11828--12068	127	1.9	126	83	5	308	24	12	19	43	1.85
11838--12069	85	2.8	84	84	3	288	25	12	19	43	1.85
12254--12281	8	3.5	8	100	0	56	25	0	0	75	0.81
12241--12281	16	2.9	15	82	17	52	24	0	0	75	0.80
12269--12318	22	2.3	23	89	6	77	44	2	0	54	1.11
12481--12585	42	2.5	43	86	6	137	22	13	22	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13752--13792	9	4.8	9	88	8	59	73	0	0	26	0.84
13746--13792	15	2.9	17	87	12	64	76	0	0	23	0.78
14055--14866	405	2.0	406	98	0	1554	42	10	14	33	1.79
15539--15850	168	1.9	168	81	6	382	37	12	9	40	1.76
15745--16128	178	2.1	181	83	5	476	42	10	8	39	1.69
16287--16319	17	2.0	17	88	5	50	51	6	9	33	1.58
16574--18379	181	10.1	181	76	7	1391	40	7	10	41	1.68
16640--18379	180	9.7	183	74	9	648	40	7	10	42	1.67
18762--18794	18	1.9	17	88	11	50	39	12	6	42	1.67
18396--18980	181	3.2	180	78	7	612	39	10	9	41	1.71
19062--20035	181	5.4	178	80	5	951	41	10	7	40	1.68
20082--20125	18	2.2	20	80	15	56	56	0	0	43	0.99
20316--20382	25	2.6	26	77	17	77	52	1	0	46	1.09
20341--20379	15	2.5	16	83	8	53	53	0	0	46	1.00
20503--20561	22	2.5	23	78	15	59	52	3	1	42	1.28
20799--20895	8	12.0	8	75	19	69	43	2	2	52	1.24
20825--20908	41	2.0	43	84	13	113	46	1	2	50	1.22
21116--21172	18	3.2	18	83	11	73	57	0	5	36	1.21
21101--21172	18	4.2	17	79	10	67	55	0	4	40	1.19
21752--21801	20	2.7	18	82	14	66	52	0	2	46	1.12
21877--21937	17	3.5	17	74	14	54	52	0	1	45	1.10
21941--22419	177	2.7	177	78	1	476	39	10	7	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22457--22703	134	1.8	134	95	0	449	40	7	9	42	1.66
23807--23860	24	2.2	24	78	12	58	55	0	1	42	1.10
23985--24033	14	3.6	14	72	25	50	57	0	0	42	0.99
24116--24193	17	4.3	17	75	19	68	38	2	1	57	1.20
24248--24321	17	3.7	21	71	25	61	43	0	1	55	1.08
24272--24331	17	3.3	18	73	26	56	45	0	1	53	1.10
24856--24920	25	2.7	24	81	11	71	43	1	1	53	1.19
24930--24974	19	2.3	20	85	14	60	53	0	2	44	1.13
24887--25020	12	11.1	11	69	21	65	49	2	2	45	1.29
24944--24998	23	2.4	25	85	14	75	56	0	1	41	1.10
25451--25526	35	2.2	34	82	17	88	47	1	1	50	1.18
25497--25536	14	2.9	14	88	11	64	40	0	0	60	0.97
25497--25556	28	2.1	28	81	6	68	43	1	3	51	1.28
25840--25893	22	2.5	21	77	11	56	59	3	1	35	1.26
25899--25940	21	2.0	20	86	13	57	42	0	0	57	0.99
26119--26156	17	2.2	17	86	9	51	50	0	2	47	1.15
26206--26496	55	5.3	54	67	17	143	46	3	2	48	1.31
26278--26382	15	7.1	14	66	20	54	50	0	1	46	1.18
26101--26550	221	2.0	221	99	0	882	46	2	2	48	1.31
26621--26668	25	1.9	25	83	8	62	45	2	0	52	1.12
27114--27180	24	2.6	26	73	22	68	49	1	0	49	1.10
27106--27164	24	2.5	24	81	13	68	47	1	1	49	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27151--27204	19	2.8	19	77	11	56	40	3	1	53	1.29
27556--27599	23	1.9	22	82	17	54	43	2	6	47	1.42
28238--28277	21	1.9	21	85	10	55	50	0	0	50	1.00
29171--29766	180	3.3	179	77	7	555	39	10	8	40	1.71
30430--30471	22	1.9	22	85	9	59	45	2	0	52	1.13

Tables:   1

The End!