genome.fa.s305.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168130.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_373, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30380

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98--1073	181	5.5	179	76	11	788	38	7	11	43	1.68
1222--1479	137	1.9	136	80	5	297	39	6	11	42	1.67
1581--5092	181	19.6	180	75	7	2247	40	8	9	41	1.69
1573--5084	180	19.6	181	76	6	2540	39	8	9	41	1.69
1581--5084	361	9.8	358	76	6	2507	40	8	9	41	1.69
5108--6649	181	8.6	181	76	5	1264	41	9	8	40	1.69
9576--9616	11	3.8	10	87	12	55	21	0	24	53	1.46
9641--9797	52	3.0	52	88	3	219	40	8	24	26	1.83
10224--10257	12	2.8	12	100	0	68	14	0	17	67	1.23
10350--10416	25	2.9	22	77	14	71	31	5	37	25	1.80
10628--10668	11	3.7	11	84	12	57	24	0	21	53	1.46
10693--10849	52	3.0	52	87	3	201	40	8	26	24	1.84
14100--14159	20	2.8	22	78	17	63	31	18	1	48	1.58
16381--30380	181	77.2	182	70	13	5049	41	10	8	40	1.69
16381--30370	361	38.6	361	70	13	5491	41	10	8	40	1.69
16385--30380	539	26.0	534	71	12	5279	41	10	8	40	1.69
19415--19450	16	2.2	17	90	5	56	41	11	0	47	1.39
19403--19450	17	2.8	17	81	12	62	43	10	0	45	1.38
19401--19671	139	1.9	139	81	3	321	38	9	7	44	1.65
19530--21932	180	13.4	181	79	6	2230	41	10	8	39	1.70
19543--30370	540	20.3	541	73	12	5785	41	10	8	40	1.69
19541--30370	360	30.0	359	70	14	4079	41	10	8	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21930--30370	180	47.3	181	72	12	4195	41	9	8	40	1.69
22844--24123	707	1.8	707	80	6	1552	42	10	7	39	1.67
25949--26638	169	4.0	169	72	12	421	41	10	7	40	1.69
21994--30280	541	15.5	534	72	14	1827	41	10	8	40	1.69
27887--28578	367	1.9	368	78	11	773	39	9	9	41	1.70
28700--29114	177	2.3	175	76	6	417	42	9	8	40	1.67
29152--29483	171	1.9	171	81	4	402	41	9	8	40	1.68
29592--30274	356	1.9	360	81	4	844	41	10	8	39	1.70

Tables:   1

The End!