genome.fa.s309.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168134.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_377, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30079

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302--354	18	2.9	18	78	13	56	45	11	1	41	1.51
795--3616	181	15.9	179	78	7	2296	42	9	7	40	1.66
67--12241	709	17.3	700	73	11	5570	41	9	8	40	1.68
784--3616	357	8.0	357	77	9	2329	42	9	7	40	1.66
3626--7306	180	20.6	180	76	8	2742	40	10	8	40	1.69
4428--4466	18	2.2	18	86	9	53	56	2	7	33	1.41
51--12242	890	13.8	879	73	11	5872	41	9	8	40	1.68
7332--8379	180	5.8	178	79	5	970	43	10	7	38	1.69
7336--12242	360	13.9	360	73	11	2958	42	9	8	39	1.68
8239--8517	153	1.8	153	85	3	400	41	8	7	41	1.64
8743--8767	11	2.3	11	100	0	50	64	0	0	36	0.94
8392--11209	181	15.9	179	73	11	1141	42	9	8	39	1.68
9406--9745	165	2.0	167	82	5	402	43	7	9	39	1.66
9121--10105	526	1.9	522	80	6	1150	41	9	9	39	1.69
9573--12242	180	15.0	180	73	10	1484	42	9	8	39	1.68
11421--11453	18	1.9	17	88	11	50	39	12	6	42	1.67
10524--11501	181	5.4	178	73	9	409	42	10	7	39	1.68
12256--13926	181	9.4	180	75	8	1181	39	8	10	42	1.68
12256--13471	181	6.8	180	79	6	1184	39	7	10	42	1.67
13559--13901	182	1.9	181	87	4	512	38	8	9	44	1.67
13773--14054	153	1.8	152	84	5	381	39	9	12	39	1.74
13926--16752	181	15.7	180	77	7	2251	40	8	10	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16295--16333	18	2.1	19	85	4	53	48	7	12	30	1.69
16784--26999	181	56.4	180	71	11	4075	41	10	8	39	1.69
16784--21262	360	12.6	356	75	9	2992	41	10	8	40	1.69
21137--21395	137	1.9	137	80	6	310	42	11	5	40	1.65
20804--21759	494	1.9	498	84	5	1265	42	10	8	38	1.70
21687--22101	175	2.5	166	81	10	441	43	11	6	39	1.66
21806--26999	363	14.4	354	71	13	950	41	10	8	39	1.69
23693--24513	355	2.3	350	79	7	872	42	9	8	39	1.67
26894--27118	124	1.8	124	83	0	299	46	7	7	38	1.60
27053--28015	361	2.7	361	78	8	847	41	9	8	39	1.69
27016--29948	181	16.4	177	73	10	1311	41	9	8	40	1.68
27925--28258	159	2.1	160	80	5	370	40	8	8	42	1.65
28095--30060	543	3.6	539	77	6	1576	40	9	8	40	1.68

Tables:   1

The End!