genome.fa.s313.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168138.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_380, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29892

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73--4998	181	27.2	181	70	12	1790	39	8	9	42	1.68
73--2411	364	6.5	359	76	8	1700	40	7	9	41	1.66
1153--1185	18	1.9	17	88	11	50	48	6	6	39	1.53
73--4954	544	9.0	537	70	12	1911	39	8	9	42	1.68
2387--2509	63	2.0	63	96	0	228	44	7	13	34	1.71
2450--4998	361	7.1	358	74	10	1613	39	8	10	42	1.69
2476--4998	542	4.7	534	75	10	1648	39	8	10	42	1.69
5338--5375	20	1.9	20	88	0	58	34	2	2	60	1.24
5333--5381	20	2.7	18	79	14	55	40	2	2	55	1.23
4533--5491	493	1.9	495	82	5	1210	38	8	10	42	1.70
5005--8466	181	19.3	178	75	7	2466	40	8	10	41	1.69
5005--8467	361	9.6	357	75	7	2426	40	8	10	41	1.69
8422--8558	70	1.9	71	95	4	251	39	5	8	45	1.59
8497--9591	181	6.1	177	75	8	767	40	7	10	42	1.66
8497--9385	352	2.5	351	77	7	837	40	7	10	42	1.67
9622--12443	181	15.7	179	76	7	2197	40	10	8	40	1.69
9626--16572	181	38.9	176	72	11	1142	41	10	8	39	1.69
9623--12414	361	7.8	359	76	6	2262	40	10	8	40	1.69
12290--12596	153	2.0	152	81	8	365	38	12	9	39	1.75
12468--16572	181	22.9	180	76	8	3076	42	10	8	39	1.68
16537--16578	12	3.6	12	74	6	50	61	0	2	35	1.09
17124--17503	181	2.1	183	80	4	430	44	8	6	40	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19227--19299	38	1.9	38	97	0	137	30	30	9	30	1.89
19908--19942	16	2.2	16	94	0	61	42	11	14	31	1.81
25121--25418	155	1.9	155	82	2	366	43	9	9	37	1.69
25262--29492	180	23.4	179	72	11	2298	41	9	8	39	1.69
26838--26873	18	2.1	18	90	10	58	38	13	2	44	1.59
26124--29492	181	18.7	180	73	11	1800	41	10	8	39	1.68
27912--27949	18	2.2	17	86	9	51	42	7	2	47	1.46
26448--29492	528	5.6	532	75	12	1926	41	10	7	40	1.68
29000--29033	17	2.1	17	88	5	52	32	20	2	44	1.67
28120--29394	361	3.5	358	78	8	1111	41	10	8	40	1.69
29358--29650	156	1.9	156	81	4	358	39	10	6	43	1.65

Tables:   1

The End!