genome.fa.s315.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168140.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_382, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29819

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--1949	182	10.9	180	75	9	1259	40	9	8	40	1.69
23--1949	180	10.7	179	75	8	1275	40	9	8	40	1.69
25--4035	181	22.4	179	74	9	1455	40	10	8	40	1.69
1--4074	361	11.4	362	74	9	2795	40	10	8	40	1.69
2034--4074	181	11.3	179	77	7	1491	40	10	8	41	1.68
1--4074	542	7.6	542	74	10	2373	40	10	8	40	1.69
3949--4225	151	1.8	153	82	6	357	38	11	7	41	1.70
4124--7603	181	19.7	179	70	14	948	42	9	8	39	1.67
4073--5135	182	5.9	181	77	7	909	42	10	7	39	1.68
4100--9802	359	16.2	361	69	15	1055	42	9	8	40	1.67
5006--5284	153	1.8	153	85	3	400	41	8	7	41	1.64
5520--5544	11	2.3	11	100	0	50	64	0	0	36	0.94
5967--6013	17	2.9	16	78	12	51	57	6	0	36	1.24
5699--7603	179	10.8	179	73	11	1025	42	8	8	39	1.67
6189--6519	166	2.0	167	84	4	436	41	8	9	40	1.67
7731--8138	176	2.3	179	79	7	452	44	9	7	38	1.66
8260--9769	181	8.4	176	75	10	934	41	9	8	40	1.67
8739--9073	167	2.0	169	84	5	448	44	8	8	38	1.65
8378--9424	528	2.0	528	82	5	1267	42	9	8	40	1.67
8378--9811	542	2.7	528	78	6	1407	41	8	8	41	1.67
12110--12165	16	3.4	16	69	26	53	35	12	3	48	1.58
12095--12170	34	2.2	35	95	2	136	39	13	3	43	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12143--22628	181	58.2	179	74	8	6572	41	9	8	39	1.69
12233--22622	896	11.5	886	72	12	3311	41	9	8	39	1.69
16545--16588	19	2.4	19	82	14	56	20	4	13	61	1.50
16545--16588	20	2.4	18	85	11	54	20	4	13	61	1.50
16863--16895	17	2.0	17	88	5	50	39	9	0	51	1.34
18218--22628	358	12.3	353	74	8	2647	41	9	8	40	1.69
12143--22628	537	19.4	530	74	10	5084	41	9	8	39	1.69
23119--23625	180	2.8	179	78	8	408	43	9	7	38	1.66
22632--24168	181	8.5	180	76	6	1220	42	9	8	40	1.67
22792--24168	542	2.5	538	80	4	1366	42	9	8	39	1.67
22629--24158	361	4.3	359	76	9	1267	42	9	8	40	1.67
24138--26576	180	13.5	180	76	5	1951	39	8	9	42	1.68
24138--26576	719	3.4	715	78	6	2250	39	8	9	42	1.68
24138--26576	361	6.8	360	76	5	1979	39	8	9	42	1.68
27685--28701	536	1.9	542	79	10	1181	38	8	10	43	1.70
26637--29786	181	17.5	179	71	12	1418	39	8	10	41	1.70
29091--29779	358	1.9	358	80	8	792	40	8	10	40	1.70

Tables:   1

The End!