genome.fa.s316.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168141.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_383, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29748

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133--5028	181	27.4	174	72	12	1512	40	8	10	41	1.69
1667--1699	18	1.9	17	88	11	50	48	6	6	39	1.53
1485--5040	181	19.8	180	75	7	2469	39	8	10	41	1.68
76--5040	539	9.3	537	75	11	2958	40	8	10	41	1.69
4911--5158	133	1.9	133	85	3	347	38	8	9	44	1.66
5113--9001	528	7.3	532	74	10	1792	40	8	9	41	1.68
6167--9019	180	16.0	179	76	9	2032	40	8	9	41	1.68
5044--9019	181	22.3	179	75	9	2492	40	8	9	41	1.68
5044--9631	360	13.0	358	74	10	2701	40	8	9	41	1.68
9186--9593	180	2.3	178	81	7	466	37	6	10	45	1.65
9607--9650	18	2.4	19	92	7	81	52	11	4	31	1.57
9415--9792	200	1.9	201	80	7	448	40	8	9	41	1.67
10706--14052	181	18.6	179	72	11	1876	41	8	9	40	1.68
11179--11623	182	2.5	180	82	3	502	42	9	9	38	1.70
11638--14064	181	13.6	181	76	6	1915	41	8	9	40	1.68
12059--12546	167	2.8	167	82	5	460	42	7	10	39	1.68
11684--14054	707	3.3	700	76	8	2126	41	8	9	40	1.68
14177--14886	176	4.0	177	74	12	560	40	8	8	42	1.65
16793--17277	179	2.7	179	80	5	562	42	8	9	39	1.67
17175--17401	124	1.9	123	82	6	293	46	8	12	32	1.72
17903--17935	18	1.9	17	88	11	50	42	6	12	39	1.67
17899--17944	19	2.6	18	80	13	60	39	4	15	41	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18190--22061	181	21.6	181	75	8	2667	41	9	8	40	1.68
18190--29332	357	31.2	355	69	13	2866	41	9	8	40	1.68
18190--22060	538	7.2	532	75	9	2592	41	9	8	40	1.68
22225--22257	18	1.9	17	88	11	50	39	6	6	48	1.53
23195--23643	180	2.5	183	78	6	459	41	8	8	40	1.67
22845--25160	181	12.7	182	71	12	739	41	9	8	40	1.67
23672--23714	21	2.0	21	86	8	61	39	13	6	39	1.72
23690--25187	181	8.4	179	73	10	910	42	10	8	39	1.68
23909--25193	538	2.4	541	80	7	1369	42	9	8	39	1.68
25582--25930	180	1.9	179	79	6	384	40	8	10	41	1.69
25777--26090	158	2.0	156	80	7	350	42	8	9	40	1.67
25943--29329	181	18.9	178	74	9	2154	42	9	7	40	1.67
25968--29741	362	10.6	357	73	10	2329	42	9	8	40	1.67
25943--29329	539	6.3	540	75	10	2457	42	9	7	40	1.67
29176--29481	147	2.1	145	80	6	336	41	9	9	40	1.69

Tables:   1

The End!