genome.fa.s332.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168157.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_398, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28964

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131--717	182	3.2	181	79	3	671	39	8	10	41	1.69
555--1232	164	4.0	165	74	9	483	39	8	10	42	1.68
910--1235	181	1.8	181	79	4	388	40	9	9	40	1.70
1459--1714	140	1.8	138	80	5	300	40	8	8	41	1.67
1609--4909	181	18.5	180	75	8	2182	40	7	9	42	1.66
2798--2831	17	1.9	18	88	5	52	47	5	14	32	1.69
3324--3651	173	1.9	173	80	3	383	39	6	10	43	1.65
4090--4392	166	1.8	167	83	5	407	39	5	10	44	1.62
4372--4418	18	2.7	18	86	3	60	46	2	12	38	1.54
4638--5243	322	1.9	323	80	4	722	40	8	9	41	1.70
4959--8309	181	18.7	177	74	9	1956	40	8	9	42	1.66
4935--15626	361	29.6	357	68	13	2574	40	8	9	41	1.68
4914--15593	180	59.1	182	70	12	3628	40	8	9	41	1.68
6139--6171	18	1.9	17	88	11	50	48	0	9	42	1.35
11519--11551	18	1.9	17	88	11	50	48	6	6	39	1.53
11302--11736	174	2.4	178	80	6	436	41	8	8	41	1.66
15880--15926	18	2.7	18	74	12	53	40	12	4	42	1.63
15885--16525	180	3.6	177	77	5	576	37	11	9	41	1.73
16422--16644	120	1.9	119	85	2	313	33	13	7	46	1.70
16248--16825	297	1.9	295	80	4	667	38	10	8	42	1.70
16522--17016	182	2.7	180	83	3	600	40	10	7	40	1.69
16930--17125	101	2.0	100	84	5	261	37	12	6	43	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16263--17475	457	2.6	459	80	8	1059	39	10	8	41	1.70
17030--20041	181	16.8	179	77	7	2393	40	10	8	40	1.69
20080--21473	181	7.8	180	75	8	995	41	10	8	39	1.69
20322--21472	538	2.1	530	81	7	1270	41	10	7	40	1.67
22233--22647	179	2.3	181	80	6	468	44	10	7	37	1.67
22905--24806	180	10.6	174	72	14	405	41	8	8	41	1.66
23196--23247	18	2.9	18	72	13	54	40	11	5	42	1.65
22844--26749	542	7.3	540	74	10	1899	41	9	8	40	1.68
22825--26749	181	21.9	178	73	9	2147	41	9	8	40	1.68
26272--26691	185	2.3	179	80	9	474	41	9	7	41	1.67
26703--26954	134	1.9	134	82	8	323	44	8	7	40	1.63
26840--27280	178	2.5	178	78	8	459	42	8	7	40	1.65
27447--28319	179	4.9	176	74	7	592	42	10	7	39	1.68
28419--28964	177	3.1	175	80	6	501	40	10	8	40	1.69

Tables:   1

The End!