genome.fa.s333.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168158.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_399, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28892

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1690--1735	23	2.0	23	100	0	92	47	4	21	26	1.69
3679--3736	6	10.0	6	82	14	77	34	0	0	65	0.93
3679--3745	21	3.2	21	83	8	84	37	0	0	62	0.95
3679--3736	27	2.2	27	90	6	93	34	0	0	65	0.93
3677--3744	31	2.3	29	81	18	86	38	0	0	61	0.96
6198--6230	15	2.2	15	100	0	66	45	6	0	48	1.27
6213--6474	78	3.2	78	76	16	301	41	14	8	35	1.76
6291--6323	15	2.2	15	100	0	66	45	6	0	48	1.27
6125--6401	93	3.0	93	100	0	554	41	14	7	36	1.74
8281--8318	18	2.1	18	100	0	76	34	15	21	28	1.94
8634--8860	17	13.1	18	90	7	348	50	11	14	22	1.76
8636--8861	35	6.5	35	90	9	322	50	11	15	23	1.76
8875--9174	30	10.3	30	94	5	530	37	23	23	16	1.93
11263--11386	45	2.9	44	89	8	186	24	0	4	70	1.09
11296--11373	13	6.5	13	79	19	82	23	0	5	71	1.05
11259--11386	4	32.2	4	70	22	85	24	0	3	71	1.08
11398--11521	35	3.3	35	84	14	176	48	1	0	50	1.10
11411--11518	42	2.6	42	91	5	166	50	0	0	49	1.07
11411--11568	77	2.1	77	82	7	187	51	2	1	44	1.23
11398--11586	17	10.4	18	68	17	79	51	2	1	44	1.22
11598--11653	19	2.9	19	86	2	67	67	0	5	26	1.11
11617--11692	19	4.1	18	82	11	91	64	2	7	25	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11637--11690	18	2.9	19	88	2	83	61	3	7	27	1.40
11687--11720	17	2.0	17	94	0	59	61	8	0	29	1.26
11719--11768	15	3.1	15	84	15	73	60	8	0	32	1.26
11722--11759	18	2.1	18	100	0	76	63	10	0	26	1.27
11855--11906	25	2.1	25	96	0	95	50	15	13	21	1.78
11945--11993	17	2.9	16	80	17	55	77	2	6	14	1.05
12941--12991	22	2.4	22	93	3	86	37	7	3	50	1.50
16412--16474	21	3.2	21	89	10	98	34	0	0	65	0.93
16405--16474	13	5.5	13	80	19	85	35	0	0	64	0.94
16653--16730	10	7.6	10	80	13	63	32	7	0	60	1.25
16655--16722	27	2.5	26	86	6	100	30	8	0	60	1.27
16681--16723	11	4.0	11	93	6	79	27	9	0	62	1.25
16721--16778	20	2.8	21	81	7	64	27	13	1	56	1.47
16651--16772	21	6.0	21	79	14	73	28	12	0	58	1.40
16653--16737	21	3.5	24	78	18	95	30	9	0	60	1.29
16764--16797	17	2.0	17	100	0	68	35	11	0	52	1.38
21369--21454	22	4.1	22	82	14	128	46	9	5	38	1.60
21396--21485	17	5.0	17	85	12	126	46	11	6	35	1.66
21374--21471	39	2.5	39	98	0	187	46	10	6	36	1.63
21701--21744	22	2.0	22	100	0	88	45	4	18	31	1.69
22624--22735	36	3.1	36	94	0	197	35	25	11	27	1.90
22695--22927	42	5.4	43	80	8	186	31	20	10	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22781--23179	21	19.0	21	79	3	354	28	19	10	41	1.84
22695--22969	84	3.2	84	78	5	300	30	20	10	39	1.85
22802--23179	105	3.6	104	81	2	452	28	19	10	41	1.84
22781--23201	147	2.9	147	84	1	619	29	19	10	40	1.85
23252--23443	24	8.0	24	100	0	384	20	33	16	29	1.95
23430--23523	36	2.6	36	98	0	179	35	23	12	28	1.92
23739--23963	36	6.2	36	99	0	441	28	19	10	41	1.85
24216--24251	18	2.0	18	100	0	72	27	22	5	44	1.75
24834--24882	23	2.1	23	96	0	89	46	18	4	30	1.67
26642--26678	17	2.2	17	100	0	74	24	16	0	59	1.37
26764--26850	7	11.5	8	70	27	66	60	0	1	37	1.04
26764--26848	33	2.5	34	81	12	95	61	0	1	37	1.04
26796--26838	13	3.3	13	90	0	59	62	0	0	37	0.95
26770--26838	26	2.6	27	80	13	65	59	0	1	39	1.06
26772--26856	20	4.3	20	77	16	88	60	1	1	37	1.12
26922--27018	10	10.3	10	72	20	50	65	2	8	23	1.30
26864--27005	61	2.4	58	80	10	139	60	4	7	27	1.43
26951--26985	17	2.1	17	100	0	70	71	0	5	22	1.07
26958--27021	31	2.0	32	85	8	87	65	3	7	23	1.33
27261--27302	11	3.9	11	84	6	59	57	9	19	14	1.64
27261--27302	21	2.0	21	100	0	84	57	9	19	14	1.64

Tables:   1

The End!