genome.fa.s358.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168183.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_420, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27497

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27--843	172	4.9	172	72	18	445	40	6	8	44	1.62
31--1055	169	6.1	168	72	17	469	39	7	9	44	1.64
27--1288	169	7.5	168	70	19	458	40	7	9	42	1.65
1157--1495	181	1.9	181	80	4	407	42	6	11	39	1.67
1917--1957	18	2.3	18	87	8	57	26	0	2	70	0.99
2212--7091	181	27.3	182	75	8	3544	39	8	10	41	1.70
2212--8207	182	33.7	182	74	9	3543	39	8	10	41	1.70
4340--4381	20	2.2	20	82	4	50	42	2	0	54	1.13
2212--8207	359	16.8	355	74	9	3391	39	8	10	41	1.70
2566--8144	897	6.3	888	74	10	3055	39	8	10	41	1.70
8213--8601	181	2.1	181	79	3	424	41	8	8	41	1.66
8771--10700	181	10.7	182	78	6	1543	40	9	9	40	1.69
8770--10676	357	5.3	361	78	6	1571	40	9	9	40	1.69
8787--10700	536	3.6	532	77	7	1664	40	9	9	40	1.70
10994--11023	15	2.0	15	93	0	51	43	40	0	16	1.48
11395--11429	18	1.9	18	88	0	52	25	8	17	48	1.75
11257--11989	199	3.7	201	78	4	580	35	12	11	41	1.78
11347--12016	199	3.3	199	78	6	681	35	12	11	40	1.79
12222--17384	181	28.8	180	73	10	2139	39	8	10	41	1.68
15940--16732	358	2.2	358	79	6	811	41	7	8	42	1.63
12539--21575	539	16.9	537	72	11	2634	40	8	9	41	1.68
16803--18245	181	8.2	180	73	10	872	39	9	10	41	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18278--23337	181	28.6	180	72	10	2382	40	7	9	41	1.66
17599--18878	676	1.9	679	80	4	1481	40	8	9	41	1.68
18455--21574	361	8.8	361	74	10	1289	40	8	9	41	1.67
19467--19500	17	1.9	18	88	5	52	47	5	14	32	1.69
19516--21575	180	11.6	178	73	10	988	40	7	10	42	1.68
20753--21058	166	1.8	167	84	4	422	39	6	10	43	1.65
21273--21912	321	2.0	325	80	5	733	39	8	9	42	1.68
23461--23683	120	1.9	119	85	2	313	32	13	8	45	1.73
23561--27367	181	21.2	181	77	6	3220	41	9	8	40	1.69

Tables:   1

The End!