genome.fa.s362.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168187.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_424, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27361

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--506	181	2.9	177	80	10	504	43	8	7	41	1.63
422--669	132	1.9	133	87	2	365	43	8	8	39	1.65
543--4816	181	24.0	180	76	8	2983	41	9	8	40	1.68
1361--1688	176	1.8	181	81	8	420	42	8	8	40	1.66
2114--2159	22	2.1	21	84	11	58	30	15	6	47	1.70
3135--3167	18	1.9	17	88	11	50	36	12	9	42	1.74
1296--4742	361	9.6	361	75	8	2483	41	9	8	40	1.68
560--4784	717	5.9	711	75	10	2920	41	9	8	40	1.68
3748--4055	167	1.8	169	87	3	462	45	7	8	38	1.63
7049--7104	16	3.4	16	69	26	53	35	12	3	48	1.58
7034--7109	34	2.2	35	95	2	136	39	13	3	43	1.62
7082--17555	181	58.2	179	73	10	5790	41	9	8	39	1.69
9782--9860	38	2.1	38	95	0	140	36	13	7	41	1.74
11435--11467	18	1.9	17	88	11	50	39	6	6	48	1.53
11802--11834	17	2.0	17	88	5	50	39	9	0	51	1.34
12938--13304	192	1.9	195	79	7	415	42	9	8	38	1.68
9904--17564	535	14.2	534	75	10	2577	41	9	8	39	1.69
13172--17564	538	8.2	533	76	9	2057	41	9	8	39	1.70
17562--23264	181	31.8	181	76	7	4392	41	9	8	40	1.68
23652--23699	18	2.8	16	87	9	60	43	8	0	47	1.33
23780--25092	181	7.3	181	79	5	1247	40	9	8	40	1.69
23791--25029	360	3.4	359	79	8	1099	40	9	8	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17562--25092	542	13.9	540	71	12	2030	41	9	8	40	1.68
23791--25199	537	2.6	534	80	7	1521	40	9	8	41	1.67
25557--25591	17	2.2	17	90	10	56	34	17	0	48	1.47
25598--26044	179	2.5	181	77	11	447	42	10	6	39	1.66
26136--27262	181	6.3	181	77	5	914	43	10	7	38	1.67

Tables:   1

The End!