genome.fa.s379.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168204.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_44, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  231180

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24419--25316	41	22.0	39	89	6	1208	23	17	21	38	1.93
24419--25316	40	22.0	40	89	6	1203	23	17	21	38	1.93
24419--25316	81	11.0	80	88	7	1287	23	17	21	38	1.93
25327--25406	14	5.8	13	80	17	74	86	8	0	5	0.71
25325--25393	24	2.9	24	91	4	104	86	10	0	2	0.66
25325--25393	8	8.6	8	79	16	72	86	10	0	2	0.66
25326--25393	1	68.0	1	79	0	64	88	8	0	2	0.62
25325--25407	13	7.0	13	75	19	67	84	9	0	6	0.78
25576--25629	24	2.2	23	81	18	65	25	5	3	64	1.32
25680--25705	3	8.7	3	100	0	52	30	0	0	69	0.89
26275--26318	20	2.2	20	95	0	79	38	31	25	4	1.76
26273--26390	62	1.9	63	82	5	150	32	29	21	16	1.95
26336--26380	20	2.2	20	84	0	54	33	28	22	15	1.95
26627--26668	14	3.1	15	80	19	56	7	42	21	28	1.79
26627--26663	13	2.7	14	80	20	51	8	43	24	24	1.81
26771--27062	152	1.9	153	95	0	523	30	15	17	36	1.90
27719--29852	181	11.9	181	74	8	1416	43	9	7	39	1.66
27354--29656	362	6.4	356	73	11	997	42	10	7	39	1.67
27719--29729	722	2.8	710	77	9	1755	42	9	7	39	1.66
30147--30819	200	3.4	199	75	8	509	42	11	12	33	1.79
31053--31082	15	2.0	15	93	0	51	16	0	40	43	1.48
31389--33307	181	10.7	181	77	6	1516	40	8	9	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33472--33860	181	2.1	182	80	3	444	40	8	8	41	1.68
33860--34953	181	6.1	181	75	9	830	41	9	9	38	1.70
33866--34953	536	2.0	538	79	7	1143	41	9	9	38	1.71
34975--37582	181	14.5	181	74	7	1586	42	10	8	39	1.69
34964--37564	180	14.4	181	75	8	1785	42	10	8	39	1.69
34981--37596	362	7.3	360	75	7	1853	42	10	8	39	1.69
34980--36570	182	8.9	180	74	9	705	41	9	8	39	1.69
36552--36607	19	2.8	19	94	5	94	39	10	7	42	1.67
36571--37576	176	5.6	181	75	8	805	42	10	8	38	1.70
36566--37578	357	2.8	354	74	10	902	42	10	8	38	1.70
37714--37740	9	3.0	9	100	0	54	44	11	11	33	1.75
46919--46983	3	22.0	3	83	9	71	64	3	1	30	1.18
46933--46994	32	1.9	33	93	3	108	66	4	3	25	1.27
47139--47482	39	8.8	39	80	3	327	40	23	10	25	1.86
47139--47482	77	4.4	77	79	4	377	40	23	10	25	1.86
47140--47482	116	2.9	116	86	1	454	40	23	9	25	1.86
67771--67826	22	2.5	22	91	0	85	25	32	16	26	1.96
91601--91658	17	3.4	17	92	0	89	13	25	31	29	1.94
118177--118274	45	2.2	44	83	5	117	24	29	21	24	1.99
122767--122793	9	3.0	9	100	0	54	44	11	11	33	1.75
129745--129807	17	3.8	16	77	22	51	15	6	6	71	1.27
130697--130769	3	25.0	3	87	5	96	64	2	1	31	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130925--131268	39	8.8	39	79	3	327	40	22	10	25	1.86
130925--131268	77	4.4	77	79	4	386	40	22	10	25	1.86
130926--131268	116	2.9	115	85	2	452	40	23	10	25	1.86
143212--143258	15	3.2	15	82	14	62	25	4	2	68	1.19
143402--143444	22	2.0	21	82	13	52	27	4	0	67	1.10
143672--143726	19	2.9	19	83	5	67	70	10	3	14	1.28
143673--143714	6	6.8	6	83	5	57	69	14	0	16	1.20
144514--144590	28	2.6	29	79	10	84	64	2	1	31	1.15
144543--144602	31	2.0	30	86	3	84	65	3	5	26	1.29
148479--148513	18	1.9	18	88	11	54	48	17	14	20	1.81
154826--154935	45	2.4	45	81	0	112	25	29	20	25	1.99
154917--154971	23	2.4	23	84	0	65	21	30	25	21	1.98
155760--156587	410	2.0	411	86	2	1144	24	21	21	32	1.98
162257--162310	24	2.2	24	83	0	72	25	40	14	18	1.89
177480--177558	36	2.2	36	86	0	104	25	29	20	25	1.99
194828--194937	45	2.4	45	83	0	121	25	28	20	26	1.99
195762--196589	410	2.0	411	87	3	1175	24	21	21	32	1.98
203250--203303	24	2.2	24	76	0	63	25	38	14	20	1.91
218440--218515	36	2.1	36	82	0	89	27	31	17	23	1.97

Tables:   1

The End!