genome.fa.s38.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167863.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_132, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70279

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50--98	25	2.0	24	88	7	73	40	8	10	40	1.69
107--781	181	3.7	177	76	8	621	40	8	9	41	1.68
945--6906	181	33.2	178	76	6	4550	41	10	8	39	1.70
945--6906	363	16.6	356	76	7	4334	41	10	8	39	1.70
945--10743	359	27.0	361	71	9	4810	41	10	8	39	1.69
7109--10743	181	20.3	181	74	6	2440	42	9	8	39	1.68
7197--10577	721	4.7	707	75	9	2296	42	9	8	39	1.68
7113--10743	180	20.2	180	73	9	1918	42	9	8	39	1.68
12609--13402	177	4.4	175	77	6	603	39	8	10	41	1.70
12752--13411	181	3.7	178	76	6	562	40	8	10	41	1.69
13941--14680	180	4.1	176	78	5	675	39	8	10	41	1.69
13932--14698	357	2.1	357	79	4	814	39	8	10	41	1.70
15264--16471	177	6.8	177	74	7	765	38	7	11	41	1.70
16472--18525	181	11.4	182	77	6	1641	40	8	9	41	1.67
16601--18520	541	3.5	540	79	6	1549	40	8	9	41	1.67
15507--19454	902	4.5	896	74	11	2042	40	8	9	41	1.68
18540--19686	177	6.4	176	76	7	868	40	8	9	40	1.69
18540--19734	181	6.7	178	77	7	991	40	8	10	41	1.69
18540--19465	358	2.6	357	80	6	933	40	8	9	41	1.68
19603--19858	134	1.9	131	80	7	293	41	7	9	41	1.65
19731--22377	181	14.6	180	74	8	1780	40	8	9	41	1.67
18889--20519	845	1.9	841	78	9	1746	40	8	9	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19731--22299	723	3.6	713	77	8	2113	40	8	9	41	1.67
22710--22763	27	2.0	27	88	0	81	46	7	9	37	1.64
23956--26729	181	15.5	180	70	13	675	39	8	9	42	1.68
24320--24862	175	3.1	173	77	12	483	40	9	8	41	1.68
24847--24893	24	2.0	24	95	0	85	34	2	0	63	1.06
25162--27036	181	10.6	174	71	11	677	39	8	9	42	1.69
25256--26404	525	2.2	518	80	9	1251	39	8	10	41	1.69
26229--26264	16	2.1	17	90	10	56	44	5	11	38	1.63
25590--26560	525	1.9	518	81	5	1179	39	8	9	42	1.69
27364--29856	180	14.0	177	75	10	1574	41	8	9	40	1.68
27364--29856	354	7.0	360	74	9	1837	41	8	9	40	1.68
27337--37348	542	18.7	535	71	13	3100	40	8	9	41	1.68
30125--30162	18	2.2	18	85	4	51	34	5	2	57	1.35
29918--32238	181	13.0	181	76	8	1679	40	8	9	41	1.66
29918--32238	359	6.5	356	75	8	1527	40	8	9	41	1.66
31730--31780	23	2.2	23	82	6	59	39	1	1	56	1.22
32255--37349	181	28.2	177	70	11	1704	39	8	10	41	1.68
32257--42647	542	18.9	541	69	13	2608	40	8	9	41	1.68
34583--34831	133	1.9	133	87	3	367	39	6	9	44	1.62
34788--37247	529	4.6	531	74	10	1459	40	8	10	41	1.69
36321--36702	176	2.2	176	81	5	423	37	7	12	42	1.71
37508--37836	171	1.9	173	80	8	382	41	6	8	43	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37463--42667	181	28.8	182	74	9	3432	40	8	9	41	1.68
38861--42647	363	10.6	360	76	7	2993	40	8	9	41	1.68
42671--43305	180	3.5	179	78	5	606	41	10	10	37	1.74
43269--43301	18	1.9	17	88	11	50	48	6	6	39	1.53
43264--43310	19	2.7	18	80	12	62	44	4	10	40	1.59
43560--52737	180	51.0	175	70	14	2550	41	9	8	40	1.67
43964--44015	17	3.0	17	75	13	52	34	1	11	51	1.49
43560--52761	361	25.6	361	71	11	4067	41	9	8	40	1.67
44613--47459	181	15.9	180	77	6	2207	40	9	8	41	1.68
43560--52748	542	17.0	541	71	12	3596	41	9	8	40	1.67
45780--45812	18	1.9	17	88	11	50	36	6	9	48	1.60
47209--47730	271	1.9	267	84	6	687	41	9	7	40	1.66
47661--47693	18	1.9	17	88	11	50	39	6	6	48	1.53
48384--52748	180	24.4	180	76	7	2945	42	9	8	40	1.67
50575--50609	16	2.2	16	90	5	54	62	0	5	31	1.18
52261--53468	657	1.8	652	78	7	1352	40	9	8	40	1.69
53650--56085	181	13.6	181	75	8	1657	42	9	8	40	1.67
53650--58855	540	9.8	529	72	11	1748	42	9	8	39	1.68
56657--56967	161	1.9	160	81	7	371	45	10	6	37	1.65
56275--57292	514	2.0	513	79	7	1098	42	10	6	39	1.67
56790--58844	181	11.5	179	74	8	1318	42	10	7	39	1.68
56790--58863	361	5.8	358	74	8	1370	42	10	7	39	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60178--62064	361	5.3	351	76	8	1297	40	9	9	41	1.69
60154--62064	181	10.7	181	77	5	1517	40	9	9	40	1.70
60302--62064	180	9.8	178	77	6	1117	40	9	9	40	1.70
62292--62636	180	1.9	178	83	5	446	42	10	7	40	1.68
62581--62699	61	2.0	61	81	0	139	34	11	6	47	1.67
62642--68665	181	33.6	179	75	9	3837	41	10	8	39	1.70
62642--64355	180	9.5	179	75	7	1289	41	10	9	39	1.71
62642--68665	358	16.8	360	75	7	4269	41	10	8	39	1.70
62642--68665	539	11.2	536	77	7	4383	41	10	8	39	1.70
68812--70272	181	8.1	180	76	6	1135	42	10	8	38	1.70
69081--70274	539	2.2	535	78	5	1203	42	10	8	38	1.70

Tables:   1

The End!