genome.fa.s383.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168208.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_443, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26725

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
705--1532	181	4.6	180	78	6	748	41	8	9	40	1.67
705--1532	361	2.3	361	81	5	888	41	8	9	40	1.67
1251--1834	307	1.9	312	79	6	668	42	7	9	40	1.65
2308--2344	18	2.0	19	94	5	67	43	8	16	32	1.77
2082--2395	171	1.8	171	83	4	418	41	10	10	38	1.73
3053--7248	180	23.0	181	71	9	1756	39	8	10	41	1.69
3063--4803	359	4.9	350	75	10	1060	40	8	10	40	1.70
3495--4346	181	4.7	179	76	7	450	39	10	9	39	1.73
5003--5035	18	1.9	17	88	11	50	48	6	6	39	1.53
4961--7248	362	6.3	355	75	7	1433	39	9	9	41	1.70
4961--7178	543	4.1	542	78	6	1593	39	8	9	41	1.69
4971--7184	723	3.1	720	75	7	1826	39	8	9	41	1.69
6864--7241	177	2.1	177	80	6	415	39	11	9	39	1.74
7130--7406	146	1.9	145	86	3	396	38	12	11	36	1.80
7260--8304	180	5.8	181	76	9	785	41	8	9	40	1.68
8031--8063	17	2.0	17	88	5	50	48	0	12	39	1.40
8179--8462	155	1.8	154	84	2	390	42	7	9	40	1.66
8037--8645	336	1.8	336	80	2	729	41	8	10	39	1.69
8325--19213	181	60.3	181	70	12	3960	39	8	10	41	1.69
8375--9385	530	1.9	530	81	5	1213	39	8	9	41	1.70
8905--12686	361	10.6	358	71	11	1117	39	8	10	41	1.69
10079--10119	3	14.0	3	84	5	57	29	2	2	65	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10103--12704	176	14.7	177	70	13	1261	39	7	10	41	1.69
10654--10703	19	2.5	20	90	9	84	44	10	8	38	1.68
12582--12862	154	1.8	154	80	1	339	41	9	11	38	1.73
13232--20947	362	21.5	361	75	8	5411	39	8	10	41	1.69
19061--19362	157	1.9	158	84	3	403	38	8	9	43	1.68
19219--20947	181	9.6	180	76	7	1399	40	8	9	42	1.67
19219--23241	363	11.3	359	74	10	2562	40	8	9	41	1.67
20782--21107	160	2.0	160	82	5	390	40	7	9	42	1.65
20943--23245	181	12.8	176	72	12	1056	40	8	9	41	1.67
20940--21895	360	2.7	357	79	5	896	41	7	9	41	1.66
22991--23512	264	2.0	268	81	6	614	40	7	7	44	1.63
23267--26354	179	17.3	177	72	11	1279	39	8	9	42	1.67
23267--26354	181	17.4	173	70	14	891	39	8	9	42	1.67
23563--24219	354	1.9	350	80	7	774	39	8	8	42	1.67
24815--25153	176	1.9	178	83	8	442	39	7	6	45	1.59
25689--26355	353	1.9	352	82	6	841	39	7	11	42	1.69
25689--26354	177	3.8	176	77	10	596	39	7	11	42	1.69

Tables:   1

The End!