genome.fa.s384.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168209.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_444, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26713

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3949--6615	181	14.8	180	76	7	1904	40	8	9	41	1.69
3949--6628	361	7.4	357	74	6	1983	40	8	9	41	1.69
6698--8829	180	11.9	180	73	9	1259	39	7	10	41	1.69
6698--8793	359	5.8	358	74	9	1350	39	7	10	42	1.69
6694--8753	536	3.8	537	81	5	1921	39	8	10	41	1.69
8688--8961	135	2.0	135	97	0	521	35	9	10	44	1.72
8863--10682	542	3.4	537	76	7	1662	40	9	9	40	1.70
8823--10683	361	5.2	357	77	8	1544	40	9	9	40	1.70
9122--10546	718	2.0	715	80	5	1622	40	9	9	40	1.71
8823--10682	181	10.3	181	77	6	1550	40	9	9	40	1.70
11872--16092	181	23.4	180	73	9	2693	39	8	9	42	1.68
12115--12480	191	1.9	194	79	9	417	39	7	10	42	1.68
13416--13453	18	2.2	17	86	9	51	47	2	7	42	1.46
11872--15974	531	7.6	531	73	12	1899	39	8	9	42	1.68
14495--14530	18	2.1	18	90	10	58	44	2	13	38	1.59
15936--16233	155	1.9	155	81	2	357	37	9	9	43	1.68
21418--21452	16	2.2	16	94	0	61	31	14	11	42	1.81
22062--22134	38	1.9	38	97	0	137	30	9	30	30	1.89
24089--24381	164	1.8	161	82	5	383	40	6	8	44	1.61
24805--25939	176	6.5	174	73	11	736	39	7	10	42	1.68
25339--26081	176	4.2	170	74	15	508	39	7	9	43	1.66
24805--26104	522	2.5	529	82	7	1465	39	8	10	42	1.68

Tables:   1

The End!