genome.fa.s405.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168230.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_463, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26059

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287--542	140	1.8	140	82	0	332	46	7	9	37	1.64
287--571	140	2.0	140	79	4	306	44	6	10	37	1.65
107--725	321	1.9	319	81	4	730	41	7	10	40	1.68
107--739	317	2.0	319	80	4	724	40	7	10	40	1.69
427--3510	181	17.2	179	71	11	1578	39	8	10	41	1.70
427--3557	358	8.7	354	72	12	1617	39	8	10	41	1.70
4248--4890	176	3.7	175	74	10	507	42	9	9	38	1.70
5102--5427	183	1.8	179	80	8	401	42	8	7	41	1.64
6129--6461	184	1.8	185	80	7	401	41	8	8	41	1.66
5768--7465	180	9.5	171	72	11	757	41	7	9	41	1.67
5768--7468	358	4.8	356	73	12	1115	41	7	9	41	1.67
7411--7448	18	2.2	18	86	13	53	47	2	5	44	1.39
7565--7621	27	2.1	27	100	0	114	43	5	7	43	1.54
5772--8546	178	15.6	179	72	13	1350	41	7	9	41	1.66
8128--8163	16	2.1	17	90	10	56	44	8	5	41	1.58
8457--8703	136	1.8	135	94	2	442	44	8	8	38	1.64
9521--9983	169	2.7	169	78	10	415	40	9	10	39	1.71
9688--22777	181	72.2	181	73	10	7165	40	8	10	41	1.69
8594--17253	541	16.2	538	77	8	6851	40	8	10	41	1.69
17251--22777	180	30.5	180	71	11	2408	40	8	10	41	1.69
16809--17713	473	1.9	478	80	4	1067	38	7	11	42	1.70
17261--22773	361	15.2	360	72	11	3197	39	8	10	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18972--19309	168	2.0	163	79	3	354	42	8	8	40	1.66
19713--19761	18	2.7	19	81	12	75	44	0	10	44	1.37
21794--21826	16	2.0	17	88	5	50	42	3	15	39	1.62
20211--22773	542	4.8	535	78	5	2294	39	8	10	41	1.69

Tables:   1

The End!