genome.fa.s42.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167867.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_136, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68340

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
296--336	7	5.7	7	91	2	55	80	0	4	14	0.87
293--333	21	2.0	20	90	4	64	78	0	7	14	0.96
746--788	18	2.4	18	84	7	61	74	4	2	18	1.10
1131--1187	19	2.8	19	73	19	53	75	5	3	15	1.12
1428--1477	24	2.1	23	81	7	55	74	4	14	8	1.20
1696--1754	27	2.2	27	84	0	73	64	5	5	25	1.35
2148--2207	24	2.5	24	82	15	70	76	0	15	8	1.00
2762--2817	24	2.2	26	81	12	64	71	5	12	10	1.29
2971--3124	15	9.7	15	70	16	82	77	5	6	11	1.12
3057--3119	11	5.8	11	71	14	51	80	3	3	12	0.94
2971--3135	17	9.9	16	71	16	72	76	4	6	12	1.12
3159--3194	19	1.9	18	88	5	54	72	2	8	16	1.21
4853--4890	20	1.9	20	84	10	51	34	0	7	57	1.28
5033--5072	19	2.1	19	90	0	62	45	2	2	50	1.28
14180--14229	12	4.3	12	72	10	50	22	8	8	62	1.49
14283--14330	23	2.1	23	96	0	87	25	2	0	72	0.95
14288--14330	7	5.9	7	84	10	59	25	2	0	72	0.97
14558--14604	20	2.2	22	85	11	62	21	6	0	72	1.07
14682--14755	25	3.0	24	76	18	64	14	1	5	78	1.00
14682--14802	12	10.3	12	63	19	51	17	3	3	76	1.06
14945--15000	17	3.3	17	76	13	62	17	1	5	75	1.09
15427--15505	35	2.3	35	84	2	97	13	5	3	77	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15426--15498	34	2.1	36	79	7	87	12	5	4	78	1.07
15454--15505	23	2.3	23	80	6	61	15	1	3	78	0.98
15449--15516	35	1.9	35	81	0	82	17	4	2	75	1.10
15594--15626	15	2.1	16	88	5	50	12	12	0	75	1.04
15730--15804	39	2.0	37	84	10	98	18	8	4	69	1.30
15733--15804	20	3.8	18	74	17	56	15	8	4	72	1.24
16746--16776	9	3.6	9	91	8	55	9	6	9	74	1.23
16723--16796	38	2.0	37	84	7	96	12	5	4	78	1.06
16746--16784	17	2.3	17	90	0	60	10	7	7	74	1.22
16810--16881	29	2.5	30	75	6	76	6	12	11	69	1.36
16827--16888	29	2.2	29	82	2	72	9	11	8	70	1.33
16942--16978	19	1.9	19	88	0	56	16	2	5	75	1.10
17463--17521	22	2.7	22	80	12	68	13	3	8	74	1.17
17650--17703	23	2.4	22	79	14	56	12	3	3	79	1.00
17687--17769	34	2.5	33	75	5	87	18	1	7	73	1.12
17668--17785	18	6.6	18	66	20	52	17	0	6	74	1.08
17837--17904	26	2.5	28	74	11	70	13	7	5	73	1.23
18271--18366	32	3.0	32	80	10	106	16	4	5	73	1.17
18995--19049	25	2.2	24	87	3	74	14	3	5	76	1.10
18981--19049	24	2.9	24	81	10	70	14	5	5	73	1.20
19178--19234	13	4.3	12	79	16	51	5	5	3	85	0.80
19185--19235	16	3.3	15	81	10	59	5	1	3	88	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20149--20189	18	2.2	19	86	4	57	14	2	7	75	1.12
20470--20519	23	2.3	22	79	6	57	10	10	4	76	1.15
20459--20610	44	3.4	42	72	17	126	12	9	3	74	1.19
20828--20878	24	2.2	22	82	6	57	7	3	7	80	1.01
20828--20899	16	4.5	15	77	10	54	12	4	5	77	1.08
20935--20978	8	5.2	8	81	10	52	13	6	0	79	0.92
21111--21202	26	3.6	25	75	15	82	16	9	2	71	1.22
21294--21338	22	2.0	22	83	8	56	17	8	6	66	1.40
21403--21445	21	2.2	20	83	8	52	20	4	4	69	1.25
21442--21490	19	2.6	18	81	18	64	10	4	12	73	1.22
21734--21789	12	4.6	12	76	15	53	19	3	1	75	1.05
21951--21995	23	2.0	23	86	0	63	33	2	0	64	1.06
22067--22109	17	2.6	16	81	7	50	16	9	4	69	1.31
22392--22436	20	2.2	20	84	7	56	6	4	6	82	0.95
22388--22469	11	7.9	10	73	16	53	12	4	3	79	1.02
22392--22444	21	2.6	21	82	8	56	7	5	5	81	1.00
22387--22458	37	1.9	37	86	5	101	9	6	4	79	1.05
22388--22469	18	4.5	17	77	18	67	12	4	3	79	1.02
22925--22991	16	4.3	15	74	9	62	16	4	2	76	1.08
23010--23073	20	3.4	17	74	19	56	14	7	6	71	1.28
23051--23110	29	2.1	29	84	9	79	13	8	1	76	1.08
23069--23109	20	2.0	21	85	9	57	12	9	0	78	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23120--23199	25	3.4	24	66	13	58	15	10	1	73	1.15
24695--24736	12	3.2	13	76	10	50	61	2	0	35	1.09
24827--27828	463	6.5	465	85	3	3604	29	13	18	38	1.89
26612--26661	25	2.0	25	88	0	73	36	18	18	28	1.94
27952--28801	431	2.0	424	87	4	1226	39	19	11	29	1.87
28563--29432	433	2.0	430	88	1	1294	37	19	12	30	1.89
30426--32290	481	4.0	470	83	4	2239	29	13	17	38	1.89
32278--34802	469	5.5	464	83	5	2795	29	14	18	38	1.90
34684--34921	121	2.0	122	87	2	345	26	14	19	39	1.90
35944--39488	467	7.7	466	84	3	4245	30	13	18	38	1.89
35123--39488	933	4.7	930	82	4	5123	30	13	18	37	1.89
39631--40378	378	2.0	377	85	3	1002	30	11	19	38	1.87
40846--41558	366	2.0	363	87	4	1051	30	14	17	37	1.89
42322--43482	465	2.5	465	88	1	1713	31	12	18	37	1.88
44871--45750	454	1.9	453	86	1	1226	30	13	18	37	1.89
47064--48022	467	2.1	465	89	1	1447	30	12	17	38	1.88
47423--48650	652	1.9	651	85	1	1701	29	13	17	39	1.87
48076--49606	466	3.3	464	86	2	2048	32	12	16	39	1.86
49788--51942	466	4.6	465	82	4	2354	34	12	13	39	1.82
52434--52636	7	27.1	7	65	22	51	74	5	6	12	1.20
52568--52637	8	8.5	8	74	16	54	75	4	7	12	1.15
52568--52639	24	3.0	22	75	15	72	76	4	6	12	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52803--52834	17	1.9	17	93	6	57	84	12	0	3	0.74
53492--53541	12	4.3	12	70	10	50	62	8	8	22	1.49
55400--56075	349	1.9	346	83	9	838	43	24	9	21	1.83
66202--66253	27	2.0	26	82	14	63	46	1	5	46	1.38
66542--66605	24	2.6	23	75	18	58	42	1	4	51	1.32
66808--66845	6	6.5	6	93	6	69	52	0	0	47	1.00
66808--66850	17	2.5	17	92	3	68	53	2	0	44	1.13
67238--68340	444	2.5	446	99	0	2176	37	19	12	30	1.89

Tables:   1

The End!