genome.fa.s423.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168248.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_48, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  180737

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120--503	154	2.4	162	81	14	442	43	7	6	42	1.57
107--2784	179	15.6	179	72	12	1032	41	10	8	39	1.69
1851--1889	21	2.0	21	85	10	55	41	7	7	43	1.62
1316--1940	336	1.9	335	82	4	783	41	10	7	39	1.68
2560--2596	18	2.0	19	94	5	67	32	16	8	43	1.77
2788--4366	181	8.8	179	76	8	1124	39	9	9	41	1.70
2814--4324	543	2.8	538	79	6	1367	39	9	9	41	1.70
3877--3926	17	2.8	19	67	14	52	40	6	10	44	1.63
4960--5810	180	4.8	180	75	9	698	42	9	7	40	1.66
7853--8615	179	4.3	179	74	8	576	39	9	9	42	1.69
8613--9418	180	4.5	180	79	6	835	40	7	9	41	1.66
8621--9403	361	2.2	358	82	4	948	40	7	9	42	1.66
10737--10975	113	2.1	113	88	0	352	32	17	29	20	1.96
12855--12962	45	2.3	46	85	7	148	28	26	26	17	1.98
12881--12994	46	2.5	45	85	1	129	27	22	28	21	1.99
17257--17286	9	3.2	9	95	4	51	63	0	0	36	0.95
17259--17288	10	3.1	10	95	4	53	63	0	0	36	0.95
33356--33491	45	3.0	45	78	4	148	27	24	25	22	1.99
49363--49404	22	1.9	22	85	0	57	30	33	9	26	1.88
59711--59748	20	1.9	20	88	0	58	5	36	10	47	1.61
83229--83353	59	2.1	59	86	1	180	30	13	32	24	1.93
88177--88293	44	2.7	44	81	1	146	25	22	24	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88323--88408	45	1.9	45	85	0	118	30	25	24	19	1.98
106244--106321	39	2.0	39	100	0	156	33	25	12	28	1.93
107345--107391	22	2.2	22	84	3	60	38	4	42	14	1.66
111339--111674	58	5.8	57	83	9	417	33	14	9	41	1.78
111337--111672	117	2.9	117	84	6	457	34	15	8	41	1.78
112820--112922	6	17.8	6	74	11	65	75	0	3	19	1.01
112825--112882	17	3.2	17	75	20	55	75	1	3	18	1.03
112866--112927	5	11.6	5	83	11	70	75	0	4	19	0.97
112820--112927	11	9.5	11	76	15	87	75	0	4	19	1.04
112820--112922	43	2.4	42	79	12	95	75	0	3	19	1.01
112866--112927	16	3.9	15	81	12	70	75	0	4	19	0.97
112866--112927	21	2.9	21	87	2	79	75	0	4	19	0.97
113116--113334	42	5.1	42	83	8	239	34	23	17	23	1.96
113116--113341	85	2.6	86	83	7	257	35	23	17	23	1.95
113312--113370	29	2.0	29	93	0	100	37	18	11	32	1.87
113270--113411	70	2.0	71	88	4	214	35	22	16	26	1.95
113341--113420	41	2.0	41	90	5	126	37	23	16	22	1.93
113369--113474	54	2.0	54	86	0	149	36	25	18	18	1.94
113341--113515	95	1.8	95	92	0	296	36	24	17	21	1.95
113423--113537	41	2.8	41	91	0	194	34	22	19	23	1.96
114537--114587	8	6.2	8	88	2	75	11	7	0	80	0.90
114537--114587	16	3.1	16	94	2	84	11	7	0	80	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114542--114588	24	2.0	24	95	0	85	10	6	0	82	0.82
124819--125154	59	5.7	57	85	6	440	35	14	7	42	1.74
124821--125154	117	2.8	117	87	5	453	35	14	7	43	1.73
125205--125251	24	1.9	25	87	12	71	80	0	6	12	0.88
126003--126054	15	3.5	14	79	10	50	76	3	3	15	1.07
126032--126076	22	2.0	23	86	4	65	71	4	4	20	1.21
126220--126287	11	6.0	11	79	17	77	77	0	2	19	0.89
126220--126287	6	12.0	6	84	9	81	77	0	2	19	0.89
126215--126298	11	7.6	10	74	21	62	79	1	3	15	0.92
128107--128196	43	2.1	43	82	0	108	22	25	20	32	1.98
132145--132201	24	2.4	24	96	0	105	36	12	29	21	1.90
138161--138204	21	2.0	22	95	4	81	31	15	25	27	1.96
150361--150396	19	1.9	19	88	5	56	58	5	5	30	1.44
157005--158173	182	6.5	178	75	10	843	42	9	7	40	1.67
157093--158144	359	2.9	349	76	8	955	43	9	7	39	1.65
157004--158172	537	2.2	537	82	5	1312	42	9	7	39	1.67
158190--158831	176	3.5	184	77	8	579	42	9	6	41	1.63
159169--159463	159	1.9	160	80	5	355	37	8	7	46	1.63
159329--167371	181	45.1	182	73	10	1940	40	8	9	41	1.68
159696--160447	180	4.2	179	74	9	422	40	8	10	41	1.69
160903--160935	17	2.0	17	88	5	50	48	0	12	39	1.40
160626--167635	181	39.1	181	76	6	4874	40	8	9	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160627--167365	541	12.5	538	76	8	3355	40	8	9	41	1.68
159328--167635	721	11.6	714	74	9	4895	40	8	9	41	1.68
165396--165431	16	2.1	17	90	10	56	44	8	5	41	1.58
167228--168110	473	1.9	478	80	5	1063	39	7	10	43	1.67
167646--169047	177	7.8	181	76	8	1160	40	8	9	41	1.69
169050--170122	181	6.0	181	75	8	786	41	10	8	38	1.71
170562--179288	181	48.7	181	74	8	5281	40	8	10	41	1.69
171543--171590	17	2.8	18	78	12	55	47	4	10	37	1.57
173042--173346	161	1.9	163	82	4	393	42	8	7	40	1.64
173853--173902	16	2.8	19	74	20	54	44	8	12	36	1.71
173206--179187	363	16.7	359	74	9	2592	39	8	10	41	1.68
177866--178183	169	1.9	169	80	3	372	41	7	9	41	1.66
179309--180686	181	7.7	179	78	6	1159	41	9	8	40	1.67
179305--180698	543	2.6	532	80	5	1452	41	9	8	40	1.67

Tables:   1

The End!