genome.fa.s427.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168252.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_483, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25333

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
669--733	22	3.0	21	76	14	69	55	1	0	43	1.09
668--736	14	4.8	14	70	12	59	55	1	0	43	1.08
1242--1334	12	7.7	12	67	20	50	46	3	1	49	1.25
1815--1849	18	1.9	18	88	0	52	54	0	0	45	0.99
1986--2063	18	4.2	19	68	25	60	47	3	1	47	1.28
1973--2027	25	2.2	26	83	3	67	49	3	0	47	1.19
1971--2072	27	3.7	27	73	19	95	49	2	1	46	1.28
3243--8417	181	28.7	174	72	13	2258	41	9	8	41	1.66
4710--4759	17	2.8	19	67	14	52	36	2	8	54	1.42
4264--13930	181	53.7	180	71	11	4468	42	9	8	40	1.67
3353--7874	909	5.0	911	73	11	2103	41	9	7	41	1.66
3250--13930	540	19.8	530	71	12	3796	41	9	8	40	1.67
4278--9365	359	14.2	349	73	11	1719	41	8	8	41	1.66
7963--8013	18	2.9	18	77	14	61	37	1	9	50	1.47
8464--9475	179	5.6	178	76	9	781	41	9	8	39	1.69
9569--13930	361	12.2	356	72	11	1400	42	9	7	39	1.67
11797--12099	168	1.8	167	83	6	407	42	11	7	38	1.70
11943--13930	179	11.2	179	75	9	1398	42	10	7	39	1.67
13235--13555	165	1.9	165	83	6	409	43	8	8	39	1.65
13773--14142	147	2.5	150	76	7	365	46	10	7	36	1.65
14886--17147	181	12.6	180	71	13	625	42	9	7	40	1.66
14384--15404	508	2.0	500	80	5	1144	40	10	8	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15379--15439	31	2.0	31	96	0	113	40	8	6	44	1.60
15695--15726	16	2.0	16	93	0	55	78	0	3	18	0.89
15441--15850	214	1.9	214	90	1	660	42	9	8	39	1.69
15644--17147	181	8.3	180	77	8	1202	43	8	7	40	1.64
15643--17147	365	4.2	358	75	9	1187	43	8	7	40	1.64
16572--16625	23	2.3	23	84	12	65	55	5	0	38	1.23
16238--16972	182	4.0	181	76	7	441	44	8	7	39	1.63
17025--17279	133	1.9	133	84	4	336	38	10	6	44	1.65
17158--17611	181	2.5	180	79	4	452	37	9	10	42	1.72
17855--21267	181	19.0	181	75	7	2317	41	9	8	40	1.68
17855--22797	538	9.2	532	74	10	2097	41	9	7	40	1.68
17904--21264	720	4.7	715	73	9	1658	41	9	8	40	1.68
21548--21595	17	2.7	19	78	15	57	43	8	6	41	1.60
21297--24094	181	15.8	178	72	11	1326	41	10	7	39	1.68
21465--23847	358	6.8	352	72	13	1277	42	9	7	39	1.67
22889--23155	146	1.8	146	86	3	385	45	7	7	39	1.62
23268--23928	359	1.8	362	83	5	874	42	11	7	39	1.68

Tables:   1

The End!