genome.fa.s439.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168264.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_494, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24981

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2291--2323	17	2.0	17	88	5	50	48	0	12	39	1.40
2200--8429	181	34.8	177	70	13	1729	40	8	9	41	1.69
2212--3538	175	7.5	175	73	11	770	41	8	9	40	1.68
3720--11212	181	41.4	181	71	12	3497	40	8	9	41	1.69
3997--4485	169	2.9	169	78	6	432	40	7	9	41	1.66
3997--4502	173	3.0	163	77	9	442	40	7	9	41	1.67
2013--11210	360	25.4	357	70	13	3647	39	8	9	41	1.69
9463--9499	17	2.1	18	90	5	58	32	2	8	56	1.43
8829--11212	179	13.3	180	74	10	1548	40	9	10	40	1.71
11738--12344	181	3.4	180	76	6	515	38	9	11	40	1.73
12366--15929	536	6.7	536	74	8	2531	40	8	9	41	1.69
12351--20555	179	45.4	180	69	13	2768	40	8	9	41	1.69
14317--14723	175	2.3	175	77	10	393	39	9	8	42	1.68
16546--17863	536	2.4	532	79	8	1235	39	7	10	42	1.67
18458--19808	177	7.6	177	76	10	680	40	9	9	40	1.70
21175--21717	178	3.1	177	75	9	442	39	9	9	40	1.71
20886--22479	180	8.9	179	72	12	693	40	8	9	41	1.68
22073--22105	17	2.0	17	88	5	50	51	0	9	39	1.34
22440--22513	16	4.7	15	74	22	55	48	5	8	37	1.56
22272--22692	227	1.9	223	80	5	497	40	7	9	42	1.67
22491--23276	181	4.3	180	74	9	688	37	7	11	43	1.70
22493--23194	361	1.9	361	79	8	788	37	7	10	43	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23122--23400	153	1.8	153	81	7	352	41	8	11	38	1.71
23275--24976	181	9.5	182	78	8	1408	41	7	9	40	1.68

Tables:   1

The End!