genome.fa.s449.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168274.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_502, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24714

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
788--1636	183	4.8	171	75	9	396	41	9	7	41	1.66
132--1980	181	10.5	177	74	11	1198	42	9	7	41	1.65
132--1973	180	10.5	177	74	11	1056	42	9	7	41	1.65
288--1974	363	4.8	349	75	11	1121	41	9	7	41	1.65
2287--3169	358	2.5	353	80	4	932	41	9	8	40	1.67
1977--3169	177	6.7	179	76	7	920	41	9	8	39	1.69
3049--3308	139	1.9	139	80	0	313	38	8	6	46	1.60
3184--6451	181	18.3	179	75	7	2206	41	10	8	39	1.69
3184--6451	358	9.1	357	75	8	2319	41	10	8	39	1.69
3184--6452	540	6.1	534	77	8	2276	41	10	8	39	1.69
3736--5861	895	2.4	887	80	6	2215	41	10	8	39	1.70
3184--6451	177	18.3	179	76	7	2245	41	10	8	39	1.69
8508--9166	359	1.8	361	80	5	796	41	7	8	42	1.64
8329--9299	181	5.4	172	73	11	452	41	8	9	41	1.66
9532--10814	179	7.2	176	74	8	461	38	8	10	41	1.71
11607--11645	18	2.1	19	86	13	55	51	10	5	33	1.58
11526--11883	181	2.0	181	80	4	409	39	8	9	43	1.67
13376--13408	17	2.0	17	88	5	50	48	0	12	39	1.40
12035--18079	181	33.7	181	77	6	4807	39	8	10	41	1.70
12035--18079	539	11.2	538	77	7	4794	39	8	10	41	1.70
18073--18103	15	2.1	15	94	5	55	48	6	6	38	1.55
18085--18473	181	2.1	180	80	4	424	40	8	9	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18641--20567	181	10.7	181	79	4	1751	41	9	8	40	1.70
18659--20574	536	3.6	535	78	6	1789	40	9	9	40	1.70
22138--22437	153	1.9	160	81	6	364	36	8	10	45	1.68
22369--22700	177	1.9	177	83	4	434	39	6	9	44	1.63
22858--23190	177	1.9	180	80	6	399	40	6	9	44	1.62
23347--23679	177	1.9	180	79	6	390	40	6	9	44	1.62
22260--24714	977	2.5	974	95	1	4447	39	7	9	43	1.65
22260--24714	489	5.0	488	96	1	4408	39	7	9	43	1.65

Tables:   1

The End!