genome.fa.s45.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167870.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_139, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67612

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55--3460	181	19.0	180	74	9	2188	40	8	10	41	1.69
1--3460	358	9.7	358	74	9	2245	39	8	10	41	1.69
1--3148	714	4.4	702	75	11	2151	39	8	10	41	1.69
52--3497	534	6.4	528	74	10	1984	40	8	10	41	1.69
3523--4771	177	7.0	178	77	8	960	41	9	8	40	1.68
3523--4527	358	2.8	356	85	2	1243	41	9	7	40	1.67
3543--4767	358	3.4	355	82	4	1081	42	9	8	40	1.67
4779--15882	181	62.3	181	74	9	7003	41	9	8	40	1.68
5039--15888	360	30.4	360	74	8	7006	41	9	8	40	1.68
8052--8085	17	2.1	17	88	5	52	29	11	5	52	1.61
9811--9841	9	3.4	9	100	0	62	41	9	12	35	1.76
10011--10065	17	3.1	19	76	12	62	36	14	7	41	1.74
12178--12500	169	1.9	169	83	2	425	39	9	8	41	1.70
15769--16027	143	1.8	139	83	6	342	40	7	8	43	1.64
15581--16198	320	1.9	323	80	5	723	40	8	8	41	1.67
16680--17145	244	1.9	244	80	3	544	42	7	9	41	1.65
16896--21796	180	27.4	181	76	7	3609	40	8	9	41	1.68
16896--21802	361	13.7	360	74	9	2789	40	8	9	41	1.68
17278--21796	721	6.3	710	74	8	2457	40	8	9	41	1.68
17021--21802	541	8.9	538	76	8	1839	40	8	9	41	1.68
22019--22072	27	2.0	27	92	0	90	37	7	7	48	1.59
22237--24099	181	10.4	178	74	6	1296	41	10	8	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22882--24995	540	4.0	537	76	8	1379	42	10	7	40	1.67
23941--24251	151	2.1	150	80	4	356	41	10	8	39	1.69
24108--24996	181	5.0	178	78	7	842	42	9	7	40	1.66
24501--25479	489	2.0	490	82	2	1207	42	10	8	39	1.69
24992--29471	357	12.6	350	72	9	1926	41	10	8	39	1.69
25005--26183	534	2.2	534	81	4	1310	41	10	8	39	1.70
24992--26183	177	6.7	177	78	6	1036	41	10	8	39	1.70
26063--26323	140	1.9	140	80	0	315	37	9	6	45	1.64
26198--29479	181	18.3	180	76	6	2409	41	10	8	39	1.69
26198--29480	539	6.1	534	77	7	2299	41	10	8	39	1.69
30025--30056	16	2.0	17	88	11	50	6	15	18	59	1.57
31552--32631	181	6.0	179	77	7	819	40	8	10	40	1.69
31749--32417	361	1.9	357	82	2	847	40	8	9	40	1.68
32983--33327	180	1.9	181	81	2	417	39	11	8	41	1.71
32875--33810	482	1.9	489	81	4	1126	38	9	9	42	1.70
33350--35883	181	13.9	180	71	10	1172	41	9	8	40	1.69
33363--34751	537	2.6	533	78	5	1353	41	9	8	40	1.68
34716--34789	36	2.1	36	94	0	130	48	5	4	41	1.45
34831--35151	171	1.9	171	82	6	409	41	10	7	41	1.67
34794--35816	358	2.9	357	77	6	941	40	10	8	40	1.70
35936--36994	181	5.9	177	78	5	875	39	7	10	43	1.66
35965--36943	358	2.7	355	77	5	915	38	6	10	43	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37953--38002	21	2.4	22	80	6	59	18	30	26	26	1.98
39134--40592	181	8.1	180	75	9	1083	41	9	8	39	1.69
40682--40767	37	2.3	38	86	6	113	22	2	1	74	1.00
40676--40767	6	15.0	6	75	11	80	20	2	1	76	0.96
41471--41578	21	4.7	21	71	23	76	28	1	0	68	1.06
41520--41584	9	7.4	9	78	16	66	21	1	0	76	0.86
41520--41578	4	14.8	4	78	18	61	22	1	0	76	0.88
41519--41578	13	4.6	13	83	12	79	21	1	0	76	0.87
41676--41706	15	2.1	15	93	0	53	58	6	0	35	1.24
41596--41740	56	2.5	60	81	6	174	44	6	13	34	1.71
44586--46860	181	12.6	181	76	7	1589	40	9	9	41	1.69
47333--49075	180	9.7	178	76	7	1459	41	9	7	41	1.66
47201--49075	533	3.5	528	77	8	1394	42	9	7	41	1.65
49072--53556	181	25.2	178	70	12	1716	41	10	8	39	1.69
49072--50265	359	3.4	357	78	7	1010	41	10	8	40	1.69
49085--50265	536	2.2	533	80	4	1292	41	10	8	40	1.69
50145--50405	140	1.9	140	81	0	324	37	8	6	47	1.61
50280--53564	181	18.3	180	76	5	2384	41	10	8	39	1.69
50280--53565	544	6.1	539	77	6	2456	41	10	8	39	1.69
50482--53565	538	5.7	530	76	7	1957	42	10	8	39	1.69
55567--55651	42	2.0	42	83	0	107	47	10	14	28	1.77
55614--56714	181	6.1	181	79	5	977	41	8	9	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55705--56710	362	2.8	360	81	3	1095	41	8	9	41	1.67
55628--56689	543	2.0	537	81	4	1235	40	8	9	41	1.68
56726--56778	18	3.0	18	81	10	65	39	9	5	45	1.60
56733--57372	181	3.5	177	78	6	599	38	10	8	42	1.69
57389--59924	361	7.0	357	72	11	1198	41	9	8	40	1.69
57395--58792	181	7.8	179	76	5	1092	40	9	8	40	1.68
58758--58831	36	2.1	36	94	0	130	48	5	4	41	1.45
58873--59193	171	1.9	171	82	7	402	41	10	7	41	1.66
58843--59929	181	6.1	180	73	10	739	40	10	8	40	1.70
59971--60862	181	5.0	177	80	5	857	39	6	10	44	1.64
59972--60862	358	2.5	357	80	5	956	39	6	10	44	1.64
61962--62015	21	2.6	21	82	5	65	18	29	25	25	1.98
63144--64617	181	8.1	179	75	8	1084	41	9	8	39	1.69
63393--64468	554	1.9	555	80	5	1255	42	9	8	40	1.67
64701--64794	13	7.0	13	70	16	59	25	2	1	71	1.04
64707--64794	19	4.6	19	76	16	74	26	2	1	70	1.06
64708--64773	6	11.2	6	82	9	73	28	1	1	68	1.08
64731--64779	16	3.1	16	93	0	80	34	0	0	65	0.93
64727--64779	22	2.4	22	93	0	88	33	0	0	66	0.92
65553--65607	4	13.8	4	81	14	69	21	1	0	76	0.88
65547--65613	8	7.4	9	83	11	68	20	1	0	77	0.85
65553--65607	13	4.2	13	88	6	85	21	1	0	76	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65545--65611	9	7.6	8	79	17	62	19	1	0	79	0.82
65625--65774	59	2.5	60	81	3	178	44	7	13	35	1.72

Tables:   1

The End!