genome.fa.s456.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168281.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_509, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24566

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3243--3286	19	2.3	19	100	0	88	43	9	15	31	1.79
3248--3294	19	2.7	17	87	9	60	40	12	14	31	1.84
4528--4584	26	2.2	26	100	0	114	52	10	8	28	1.65
4724--4768	20	2.1	21	84	15	58	46	6	13	33	1.69
4565--6030	181	8.1	180	76	5	1115	39	9	10	40	1.70
4553--6030	362	4.1	360	75	6	1240	39	8	10	40	1.70
5618--5658	21	2.0	20	86	9	57	46	2	7	43	1.44
6054--9560	181	19.6	179	75	8	2460	41	10	8	39	1.70
6034--24530	539	34.4	539	69	13	4505	41	9	8	39	1.68
6128--9560	361	9.6	361	75	9	1988	41	10	8	39	1.70
9461--9670	110	1.9	105	83	7	269	49	9	9	31	1.66
9787--11043	182	7.1	177	76	11	814	42	10	7	38	1.69
10061--16328	362	17.7	346	70	13	997	42	9	8	39	1.68
10325--11040	363	2.0	355	83	6	906	42	11	6	39	1.68
11117--16328	181	29.2	180	72	11	1800	42	9	8	39	1.67
11053--12048	361	2.8	359	78	7	787	44	8	8	38	1.66
12656--13151	174	2.8	174	79	9	438	41	10	8	39	1.69
14496--14529	16	2.2	16	89	5	52	76	0	0	23	0.79
12044--16328	362	11.9	358	74	9	2627	42	9	8	40	1.67
11053--16328	718	7.4	712	74	10	3358	42	9	8	39	1.67
14745--15434	169	4.0	169	73	9	431	42	10	7	40	1.66
16203--16444	124	2.0	124	86	3	344	42	9	7	41	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16333--16994	181	3.7	182	79	5	736	42	8	7	41	1.63
16869--17110	124	2.0	124	84	3	317	42	8	7	41	1.64
16999--17661	181	3.7	181	80	5	698	42	8	7	40	1.65
17666--24530	358	19.2	360	76	7	4913	41	10	8	40	1.69
20297--20352	18	3.1	20	73	23	61	42	12	5	39	1.65
17666--24530	181	38.5	177	74	9	4192	41	10	8	40	1.69
17666--24524	714	9.6	700	74	10	3560	41	10	8	40	1.69

Tables:   1

The End!