genome.fa.s460.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168285.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_512, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24460

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301--1719	181	7.9	179	78	5	1207	40	8	9	41	1.68
23--2932	362	8.2	360	73	9	1411	40	8	10	41	1.69
1624--1913	160	1.8	159	83	0	391	43	7	11	37	1.69
1759--2932	179	6.5	182	77	6	987	40	8	9	41	1.68
1759--10394	542	16.1	536	73	11	4390	39	7	10	42	1.68
2800--3080	149	1.9	147	86	4	404	37	6	11	44	1.65
2948--5744	181	15.7	179	74	9	1766	39	8	9	42	1.68
2948--10394	541	13.9	519	71	14	1792	39	7	9	42	1.67
5613--5889	145	1.9	146	89	2	432	39	6	9	44	1.64
5725--7521	180	10.0	180	75	7	1339	40	7	9	42	1.66
5782--8152	360	6.7	356	72	12	1005	40	7	10	42	1.66
7719--8027	169	1.8	167	82	6	390	39	6	10	43	1.65
8219--8288	19	3.4	19	76	19	68	32	7	12	47	1.69
8235--8293	24	2.4	25	77	11	68	33	6	11	47	1.67
8267--10394	181	11.8	180	77	5	1720	39	8	9	42	1.68
9681--9713	17	2.0	17	88	5	50	48	0	12	39	1.40
10404--11400	182	5.6	181	74	10	660	39	9	10	41	1.71
11425--13858	181	13.6	181	77	5	2020	41	8	9	40	1.68
13797--14036	132	1.8	132	83	3	322	40	8	11	39	1.72
13928--15382	354	4.1	353	77	8	1140	40	8	9	41	1.69
13894--15382	180	8.3	177	73	10	805	40	8	9	41	1.69
15298--15471	89	2.0	89	82	4	217	44	7	8	39	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15485--15520	16	2.1	17	90	10	56	44	8	5	41	1.58
15801--16101	163	1.8	163	81	1	370	44	9	7	37	1.66
16186--16453	134	2.0	133	84	2	349	41	9	10	38	1.72
16380--16712	179	1.9	178	84	3	445	42	7	8	41	1.63
16800--21565	357	13.3	355	72	10	1686	41	9	8	39	1.68
16719--21565	180	27.1	180	74	9	2880	41	10	8	39	1.69
18046--18917	179	4.8	179	78	8	616	41	9	8	40	1.68
19292--19668	201	1.9	201	82	3	472	42	8	7	41	1.62
21772--21804	18	1.9	17	88	11	50	39	6	6	48	1.53
22186--22266	34	2.4	34	87	4	112	35	3	12	48	1.59
22538--24086	181	8.6	172	70	14	525	42	9	8	39	1.68
23452--24086	349	1.8	351	80	7	763	41	11	7	39	1.68

Tables:   1

The End!