genome.fa.s464.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168289.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_516, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24337

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75--220	30	5.1	27	70	23	95	49	1	0	48	1.14
112--191	28	2.8	27	73	26	76	47	0	1	51	1.08
148--181	12	3.0	12	87	12	54	47	0	0	52	1.00
75--214	31	4.8	29	70	22	82	48	1	0	49	1.15
673--704	11	2.8	11	95	4	55	46	0	0	53	1.00
830--867	19	2.1	18	90	5	58	55	2	0	42	1.14
855--903	23	2.1	23	88	0	71	46	2	4	46	1.33
869--922	20	2.6	21	88	11	76	42	0	3	53	1.18
1507--1574	24	2.9	24	76	4	68	51	4	1	42	1.31
2277--2353	20	3.5	21	86	13	95	44	0	2	53	1.14
2277--2431	12	13.0	12	67	23	55	42	0	3	53	1.19
2281--2394	18	6.6	17	72	22	60	42	0	3	53	1.18
3118--3152	16	2.3	15	90	5	52	37	5	2	54	1.39
3299--3358	17	3.6	17	73	11	52	43	3	1	51	1.28
3347--3388	15	2.9	14	80	19	50	45	2	2	50	1.27
4126--4165	21	1.9	21	85	10	55	42	2	5	50	1.37
4294--4326	16	2.1	16	88	11	50	30	0	6	63	1.18
4513--4854	182	1.9	179	80	1	405	40	9	8	41	1.68
5339--5866	180	2.9	176	80	6	492	41	10	8	39	1.70
7203--7288	29	3.1	29	75	20	85	51	4	0	44	1.22
7531--7566	18	1.9	19	88	5	56	55	2	2	38	1.29
7463--7613	18	8.1	18	65	22	53	49	2	3	45	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9074--9115	22	2.0	20	82	17	50	54	2	2	40	1.26
9585--9632	21	2.2	22	85	3	71	56	2	4	37	1.30
9963--10653	180	3.8	181	73	6	555	40	9	8	41	1.68
10499--10818	159	2.0	156	82	6	387	38	7	10	43	1.67
11213--11255	10	4.4	10	79	5	52	44	2	0	53	1.13
11214--11269	29	1.9	29	85	0	76	46	3	0	50	1.19
12069--12109	21	2.0	21	85	0	55	53	4	0	41	1.22
12181--12237	22	2.7	21	78	21	66	56	0	0	43	0.99
12184--12259	29	2.9	28	80	16	74	53	0	0	46	1.00
12189--12259	25	3.0	26	80	15	66	53	0	0	46	1.00
12481--12546	14	4.1	15	82	15	62	37	3	1	57	1.23
12539--12594	18	3.2	18	78	19	64	51	0	1	46	1.11
12671--12730	20	2.9	19	83	14	59	45	3	0	51	1.17
12684--12734	27	1.9	26	88	4	75	49	1	0	49	1.12
12762--12809	21	2.4	19	82	6	60	62	0	2	35	1.07
14463--14495	13	2.4	14	85	10	50	48	3	3	45	1.33
14488--14554	14	4.4	15	71	16	50	46	0	1	52	1.09
14479--14557	32	2.5	31	82	16	90	46	1	1	50	1.17
14494--14558	16	4.1	16	71	16	55	47	0	1	50	1.10
14488--14560	29	2.6	30	80	8	82	47	0	1	50	1.09
15541--15673	20	6.5	20	71	17	87	42	0	3	54	1.18
15560--15673	12	9.8	12	68	22	50	41	0	4	54	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15543--15636	18	5.6	17	71	22	65	42	0	3	54	1.16
15543--15677	68	2.0	68	80	8	150	42	0	3	54	1.18
16334--16364	15	2.0	16	93	6	55	45	3	6	45	1.45
16376--16410	16	2.3	15	90	5	52	37	5	2	54	1.39
16557--16606	21	2.4	21	78	21	61	44	4	0	52	1.20
16805--16834	12	2.6	12	94	5	53	46	0	0	53	1.00
17396--17435	21	1.9	21	90	10	64	42	0	5	52	1.23
17474--17508	16	2.2	16	90	10	54	34	0	8	57	1.29
17564--17596	16	2.1	16	88	11	50	27	0	9	63	1.24
17748--17830	27	3.0	29	77	8	75	46	0	7	45	1.30
18640--18683	13	3.2	13	83	6	52	47	0	6	45	1.29
19946--20005	23	2.6	24	81	5	70	51	0	0	48	1.00
20018--20109	41	2.2	42	79	11	109	48	1	4	45	1.29
20080--20117	17	2.2	18	90	4	60	47	0	2	50	1.15
20838--20879	20	2.1	20	86	0	57	54	2	2	40	1.26
21113--21155	15	2.8	16	86	6	54	55	0	0	44	0.99
21190--21246	17	3.4	18	76	11	50	47	1	0	50	1.11
21182--21246	23	3.0	22	78	10	71	47	1	0	50	1.10
21202--21251	11	4.1	12	74	20	50	46	2	0	52	1.12
21199--21255	23	2.6	20	73	26	53	47	1	0	50	1.11
21246--21293	24	2.0	24	88	8	71	50	6	0	43	1.27
21186--21299	53	2.1	52	81	13	126	48	4	0	47	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21749--21816	24	2.8	23	76	8	64	52	1	2	42	1.25
22080--22948	180	4.8	178	78	7	810	42	9	7	40	1.66

Tables:   1

The End!