genome.fa.s471.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168296.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_522, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23991

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
310--350	21	2.0	21	86	13	59	41	7	2	48	1.44
289--753	163	2.8	165	80	10	482	43	7	6	42	1.58
5--7602	718	10.6	707	70	13	2663	41	9	8	40	1.69
5--4025	177	22.8	174	74	11	2152	41	9	8	40	1.68
590--3925	892	3.7	880	75	8	2321	40	9	8	40	1.70
20--4028	534	7.6	532	76	9	1979	41	9	8	40	1.68
4269--4551	156	1.8	158	82	4	367	39	8	9	42	1.69
4404--7602	181	17.8	181	77	6	2568	41	9	8	40	1.69
4404--7578	537	5.9	536	76	5	2627	41	9	8	40	1.69
5--21023	720	28.9	719	68	14	5239	41	9	8	40	1.69
7594--7648	22	2.8	20	86	10	69	30	16	0	52	1.44
7939--7971	17	1.9	17	88	11	50	27	21	6	45	1.75
7671--12441	539	8.9	533	74	10	1617	41	9	8	39	1.69
8046--12441	358	12.4	360	73	11	2257	41	9	8	39	1.69
8025--12441	181	24.8	175	73	10	2207	41	9	8	39	1.69
11149--11199	18	2.9	18	71	14	52	39	9	7	43	1.67
10756--12435	357	4.7	351	75	10	830	41	10	8	39	1.69
9804--12444	177	14.8	177	72	11	945	41	10	8	39	1.70
12502--17489	181	27.7	181	76	6	3528	41	9	8	40	1.68
12502--17489	358	13.9	356	76	7	3643	41	9	8	40	1.68
12669--21036	902	9.3	889	71	12	4170	41	9	8	40	1.68
18525--18572	18	2.8	16	84	9	51	43	6	2	47	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19196--21036	177	10.3	180	77	9	1480	41	10	8	40	1.69
18664--23985	535	10.1	537	70	14	2282	41	9	8	40	1.68
21034--23990	180	16.8	181	74	10	1673	41	9	7	40	1.67
21303--23975	353	7.6	338	72	14	910	41	9	8	40	1.67

Tables:   1

The End!