genome.fa.s481.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168306.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_531, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23842

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
791--843	26	2.0	26	96	0	97	28	26	18	26	1.98
1684--1734	26	2.0	26	96	0	93	27	27	17	27	1.98
3539--3620	26	3.2	26	91	0	137	26	24	21	26	2.00
4465--4517	26	2.0	26	100	0	106	26	26	20	26	1.99
5321--5370	26	1.9	26	91	0	82	34	26	12	28	1.92
3574--7686	897	4.7	865	85	7	4404	25	24	24	25	2.00
6214--6266	26	2.0	26	100	0	106	26	26	20	26	1.99
5078--7836	898	3.1	886	85	6	3496	25	25	24	25	2.00
7112--7161	23	2.0	24	81	11	57	26	24	18	32	1.97
7813--7862	26	2.0	26	96	4	93	24	28	20	28	1.99
9443--9498	26	2.2	26	100	0	112	28	25	19	26	1.99
10188--10240	26	2.0	26	96	0	97	26	24	20	28	1.99
8707--10954	742	3.0	741	90	2	3436	27	23	22	26	2.00
11086--11138	26	2.0	26	92	0	88	28	22	20	28	1.99
11988--12040	26	2.0	26	92	0	88	26	22	20	30	1.98
13744--13796	26	2.0	26	92	0	88	28	28	18	24	1.98
10165--14502	866	4.9	888	85	5	5654	26	24	23	25	2.00
14476--14528	26	2.0	26	96	0	97	26	24	22	26	2.00
13733--15245	744	2.1	731	89	3	2320	27	25	22	25	2.00
15378--15430	26	2.0	26	92	0	88	26	22	20	30	1.98
16275--16327	26	2.0	26	96	0	97	26	24	20	28	1.99
14452--19693	897	5.9	899	86	4	7245	25	25	24	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18044--18096	26	2.0	26	92	0	88	26	26	18	28	1.98
19667--19719	26	2.0	26	100	0	106	26	26	20	26	1.99
18905--20437	741	2.1	741	90	2	2380	26	25	22	25	2.00
20570--20622	26	2.0	26	96	0	97	26	24	20	28	1.99
19643--22542	903	3.2	902	86	5	3994	24	25	25	24	2.00
22345--22400	26	2.2	26	90	0	85	30	21	19	28	1.98
22618--22650	11	3.0	11	100	0	66	18	27	36	18	1.94

Tables:   1

The End!