genome.fa.s483.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168308.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_533, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23818

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72--9794	180	54.6	177	73	11	4900	39	8	9	41	1.68
1--9794	539	18.3	533	72	11	4991	39	8	9	41	1.69
1--9794	360	27.5	358	73	10	5570	39	8	9	41	1.69
5295--5550	135	1.9	137	79	8	292	40	5	12	41	1.66
4934--5909	489	2.0	493	83	5	1235	38	8	10	42	1.70
5978--9794	181	21.3	180	74	8	2402	40	8	10	41	1.69
6932--7902	358	2.7	354	76	7	823	41	9	9	39	1.71
9837--12637	181	15.6	181	76	7	2175	40	10	8	40	1.69
11383--11416	16	2.2	16	89	5	52	76	0	0	23	0.79
9837--12637	361	7.8	358	75	7	1994	40	10	8	40	1.69
12161--12213	18	3.0	18	75	10	56	32	1	15	50	1.54
12661--15228	181	14.2	180	76	7	1823	42	10	7	39	1.67
12662--15203	361	7.0	358	76	8	1883	42	10	7	39	1.68
13938--14290	190	1.8	192	83	3	471	42	9	6	41	1.63
15069--15105	18	2.0	19	89	5	58	35	10	2	51	1.51
17604--18532	182	5.2	178	73	12	472	44	9	7	38	1.65
18047--18082	16	2.1	17	90	10	56	38	11	5	44	1.63
18235--20341	180	11.8	177	72	12	545	42	9	8	39	1.69
17586--21068	356	9.9	352	72	13	1275	42	9	8	39	1.68
17586--21068	524	6.6	531	75	10	2241	42	9	8	39	1.68
18226--23776	181	31.3	180	70	13	2007	42	9	8	40	1.68
20274--20571	164	1.8	164	82	6	383	44	8	7	39	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20092--21021	345	2.7	343	80	6	944	42	9	7	40	1.66
22641--22676	18	2.1	18	90	10	58	38	13	2	44	1.59
23108--23420	160	1.9	166	80	8	374	43	8	7	40	1.63
23430--23777	179	1.9	180	80	6	402	43	8	7	40	1.63

Tables:   1

The End!