genome.fa.s484.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168309.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_534, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23720

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61--683	176	3.5	175	74	7	452	41	10	8	39	1.69
1--855	356	2.4	360	77	5	795	41	10	8	39	1.71
1372--5282	181	22.1	177	70	13	968	42	9	8	40	1.67
1939--2242	158	1.9	156	82	4	378	43	7	8	40	1.64
1765--2395	337	1.9	337	79	5	720	41	7	9	41	1.65
2110--2564	176	2.5	174	76	11	422	42	8	9	40	1.67
1729--3120	513	2.7	516	76	7	1176	41	9	8	40	1.68
2427--2720	158	1.9	158	80	5	344	41	11	6	40	1.67
2553--5279	181	15.2	180	75	8	1786	42	9	7	40	1.66
2221--2871	339	2.0	329	78	7	688	42	11	7	39	1.69
3486--3518	18	1.9	17	88	11	50	39	6	6	48	1.53
4018--4050	18	1.9	17	88	11	50	42	6	0	51	1.26
2578--5279	361	7.5	359	75	9	1905	42	9	7	40	1.66
5967--8598	180	14.7	178	75	8	1881	42	9	7	40	1.65
5430--6459	506	2.0	502	79	7	1125	43	9	6	40	1.63
7333--7366	17	1.9	18	88	5	52	41	8	0	50	1.34
5967--8551	361	7.2	359	75	7	1981	42	9	7	40	1.65
8663--8701	18	2.1	18	85	4	51	58	0	5	35	1.20
8604--14475	181	32.9	181	74	7	3625	41	10	8	39	1.69
8689--14475	720	8.1	711	73	9	3222	41	10	8	39	1.69
10046--14484	536	8.2	538	75	8	2369	42	10	7	39	1.68
15086--15419	177	1.9	179	80	6	390	44	10	5	39	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14052--17489	488	7.0	488	95	1	6088	42	9	7	40	1.65
14052--17489	985	3.5	973	95	2	6080	42	9	7	40	1.65
18048--18591	201	2.7	200	79	3	554	41	11	11	34	1.79
18873--18902	15	2.0	15	93	0	51	16	0	40	43	1.48
19219--20852	356	4.6	348	77	9	1185	40	9	9	40	1.70
19219--21117	363	5.3	357	76	9	1357	40	9	9	40	1.70
19202--21117	181	10.7	181	76	9	1419	40	9	9	40	1.70
21287--21657	179	2.0	184	81	5	425	40	9	9	40	1.70
21620--21720	46	2.2	46	85	0	130	31	14	6	46	1.71
21746--22511	365	2.1	366	78	6	799	43	9	8	38	1.68
21666--23719	181	11.3	181	72	10	1207	41	10	8	39	1.71

Tables:   1

The End!